Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00594 atGGAGATATCATTGTTAAAAATGATAGTTAATGGCATATCCTCGTTTTTGCAATTATCATTTTCTGGAAACATGAGCACTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTCAAGTTGTTGAAGCCAATCATTGATGCGATTGTTAATTCTGAGTTAGCTTCTGACGAAGTGCTTAATAAGATAGTGGAAGAAATTGGTCGTGCTGTTAATGAATTAAAGGAGCATGTTGAGAACTGGCATCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTAATATTAAGAATTCACACTTTGGGGCTCAATCTTTTCCAGCAGCTGAAGGCTTCTCAGCATTGTCTCCCTGATGAATTAAGTTCTGAACATTTACAGAACTGTTCTCAAAAACTTAAGCTTTTGGGACATGAAGAGACCACATCAATTGTTAAGGAAGATATTACAGAACAACTGGAAAATGTAGGACCCAATTTAGAGGTGCTGGCAAAAATTGCTGATAGCCTGGGCCTAAGGACTAATCAAGAGGTTCTGATTGAGGCTGTAGCTCTTGAAAGGTTGAAGGAGAATGCTGAACAATCTGAAAAGAATGCAGAAGCTGAATACATTGATAAAATGATTACTGTTGTAACACGTATGCATGATCATCTTGTTATGCTCAAGCAAGCCCAGAGTAGCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTCTGGAATTGATGACGGATCCTGTGATTGTGGCATCCGGGCAAACATATGAGCGAGCTTACATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACCCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCACTAATTGCAAATTGGTGTGAATCAAACAATGTGCAACTGGTTGATCCCACAAAATCCACAAATTTAAATCAAGCTTCCGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAATCCCCTGTTTTTGCTCATTCTAGGAGCAACCAGCCATCGTCACCCGAGTCAGCACGTTCTCGTTCTTTTAGTTTCCCAGGTAATAACTTAACTTCTGGTGAAATACAGAAAGAGGAAACATCACCTTTGCATCCCCGATCAACATCAGAAGGTTCCTTAAGTGGTATGGTTAATGGGCTATATTTAGATCTTGAAAGAATATCTCCTGCAGGCTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCTGTGTGGATTCAGTTAGCCAATCATCAATGTCACCATCTAGAAGGGAATCTCCCAGTGCATTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGATTCCTGTGCACTTTCTACTGCAAATTTTCCTCAAGAAACACAAGGTGATCACAACAATGCTCCTCAGATGTCATCAAGTCCAGGTCACAGTAGATCTGCTTCTGCTTCTGTTGAATTAAATACAGGGTCAGAAGCTGCTGGTACTACTGCCATGCCATCAACGCATAGAGAATCTGAGTTCCCACCTCGATTGCTGGAGGCAAGGTCTCGAAGTCAAGCCTTGTGGAGGCGGCCATCAGAGAGGCTTGTTCCTAGGATAGTATCTTCTCCTGCTAATGAAGCAAGAGCTGATCTTTCTGGTATTGAAACCCAGGTTCGGAATTTGGTTGAGAGCTTGAGGAGCTCTGATGTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTGGTTGATTTACTTCGATCAACTGATGCAACGATCCAAGAAAATGCTGTTACTGCACTTCTAAACTTATCAATCAATGATAACAACAAAACGGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCACGTGCTCGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTAATTGAGGAAAACAAGATTTTCATAGGGAGGTCAGGGGCAATTGGACCACTGGTAGATTTATTGGGAAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCATTGTTTAATTTGTCAATATTTCATGAGAATAAGGGTCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCCTAGCAAATCTTGCAACAATTCCTGAAGGAAGAAGTGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAATTGGGCTCCGCGAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTGCATAGTAGCAGATTTTTAAGCATGGTACTCCAACATGGAGCTGTCCCACCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAACCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2526 0.4283 MEISLLKMIVNGISSFLQLSFSGNMSTEPVSKYYQKAEEILKLLKPIIDAIVNSELASDEVLNKIVEEIGRAVNELKEHVENWHLLSSKVYFVMQVEPLILRIHTLGLNLFQQLKASQHCLPDELSSEHLQNCSQKLKLLGHEETTSIVKEDITEQLENVGPNLEVLAKIADSLGLRTNQEVLIEAVALERLKENAEQSEKNAEAEYIDKMITVVTRMHDHLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAYIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSRSFSFPGNNLTSGEIQKEETSPLHPRSTSEGSLSGMVNGLYLDLERISPAGLDDRSASSDESCVDSVSQSSMSPSRRESPSAFSSEQSQTHIRAVSDSCALSTANFPQETQGDHNNAPQMSSSPGHSRSASASVELNTGSEAAGTTAMPSTHRESEFPPRLLEARSRSQALWRRPSERLVPRIVSSPANEARADLSGIETQVRNLVESLRSSDVDTQREATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSTDATIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKGRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00594 841 MobiDBLite consensus disorder prediction 338 374 - -
Cca01g00594 841 Gene3D - 540 630 IPR011989 -
Cca01g00594 841 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Cca01g00594 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 317 IPR013083 -
Cca01g00594 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 598 640 IPR000225 GO:0005515
Cca01g00594 841 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515
Cca01g00594 841 Pfam Armadillo/beta-catenin-like repeat 589 626 IPR000225 GO:0005515
Cca01g00594 841 Pfam Armadillo/beta-catenin-like repeat 628 667 IPR000225 GO:0005515
Cca01g00594 841 Coils Coil 179 209 - -
Cca01g00594 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 721 762 IPR000225 GO:0005515
Cca01g00594 841 SUPERFAMILY ARM repeat 558 830 IPR016024 -
Cca01g00594 841 MobiDBLite consensus disorder prediction 338 390 - -
Cca01g00594 841 MobiDBLite consensus disorder prediction 407 516 - -
Cca01g00594 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515
Cca01g00594 841 PANTHER U BOX DOMAIN-CONTAINING 7 837 - -
Cca01g00594 841 CDD RING-Ubox_PUB 240 282 IPR045210 -
Cca01g00594 841 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Cca01g00594 841 Coils Coil 62 82 - -
Cca01g00594 841 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Cca01g00594 841 Gene3D - 631 838 IPR011989 -
Cca01g00594 841 SMART arm_5 587 627 IPR000225 GO:0005515
Cca01g00594 841 SMART arm_5 541 585 IPR000225 GO:0005515
Cca01g00594 841 SMART arm_5 710 749 IPR000225 GO:0005515
Cca01g00594 841 SMART arm_5 750 790 IPR000225 GO:0005515
Cca01g00594 841 SMART arm_5 669 709 IPR000225 GO:0005515
Cca01g00594 841 SMART arm_5 628 668 IPR000225 GO:0005515
Cca01g00594 841 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 837 - -
Cca01g00594 841 SUPERFAMILY RING/U-box 226 313 - -
Cca01g00594 841 MobiDBLite consensus disorder prediction 417 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00594 Cca-Chr1 7511219 7520317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00594 196 841 U-box Gene Family AT2G23140 63.889 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00594 - - gmx:100811250 1378.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00594 01 7511219 7520317 Cca05g01340 05 31425884 31431277 PCT