Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00590 ATGGAGAGTAAGCCAAATGTGTTAATGCAAAGATACGAGTTAGGAAGATTACTTGGCCAGGGAACCTTTGGAAAGGTTTACTATGCTAGGAGTGCAATAACTAACCAGAGTGTGGCTATTAAAGTGATTGACAAAGATAAGATTACAAAAACAGGGCAAAGTGAACAAATCAGGCGCGAAATATCTGTTATGAGGCTGGCCAGACACCCCAATATAATACATCTTTTTGAGGTTATGGCGAACAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTCTTCAACAAGGTGTCCAAAGGAAAACTCAAGGAAGATGTTGCACACAAGTATTTTAAGCAGCTAATCAATGCTGTGGATTATTGTCACAGTAGAGGCGTGTACCACCGAGACATAAAGCCTGAAAACATTCTGTTGGATGAAAATGGGAATCTGAAGGTCTCCGATTTCGGTTTAAGTGCACTCGTCGAATCCAAGAGACAGGATGGTATGCTTCATACACCTTGTGGCACACCTGCTTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGATATGATGGTACCAAAGCTGATATTTGGTCTTGTGGAATAGTTCTTTTTGTCTTGTTGGCTGGTTATCTCCCTTTCCATGACCCAAATTTGATAGAGATGTATCGGAAGATAAGCAAAGCTGAATTAAAATGCCCTAATTGGTTCCCACCAGAAGTATGCAATTTATTGAGCATGATGTTGGATCCAAATCCTGACACTAGGATTCCCATATCTAATATTAGGGAATGTGGTTGGTTTAAGAAAGGACCAAATGTGAAAAACAAAAGACCTGTAGCGGAAAACAACACTGTCTCTTCTTCAGGTACAGTTCTTCCTGATCAAAATGATTGTGATGGTCTAGCAGCAGAAGCAAATGGAGAGTCAGTTGCGCCCTTAAGAATAAACGCCTTTGATATTATCTCCCGATCCGTGGGTTTTGATCTTTCTAGGTTCTTTGATGACAGTTTTCAGAAAAAGGAAGCAAGATTTAGTTCAAGGTTACCTGCCAATGTCATCATCTCCAAGCTGGAAGACATTGCTAAGCAACTGAGGATGAAAATAAAGAAAAAAGCTGCTGGTTTGTTGAAATTAGAAAGCACCGACGAAGGTAGAAAGGGGGTTTTATCCATTGATGCAGAGATCTTTGAGGTTACTCCTTGTTTCCACATGGTGGAGGTGAAAAAATCAGATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATTAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGACCAACAATTACAATCACAACAGTCAGAGCAACAGCTACAGACAGATGACCAGCAGCAGCAACAACCACAGTCATAA 1389 0.4039 MESKPNVLMQRYELGRLLGQGTFGKVYYARSAITNQSVAIKVIDKDKITKTGQSEQIRREISVMRLARHPNIIHLFEVMANKSKIYFVMEYAKGGELFNKVSKGKLKEDVAHKYFKQLINAVDYCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVESKRQDGMLHTPCGTPAYVAPEVIKRKGYDGTKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKISKAELKCPNWFPPEVCNLLSMMLDPNPDTRIPISNIRECGWFKKGPNVKNKRPVAENNTVSSSGTVLPDQNDCDGLAAEANGESVAPLRINAFDIISRSVGFDLSRFFDDSFQKKEARFSSRLPANVIISKLEDIAKQLRMKIKKKAAGLLKLESTDEGRKGVLSIDAEIFEVTPCFHMVEVKKSDGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSQQSEQQLQTDDQQQQQPQS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00590 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cca01g00590 462 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Cca01g00590 462 Gene3D Transferase(Phosphotransferase) domain 1 3 308 - -
Cca01g00590 462 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 452 - -
Cca01g00590 462 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cca01g00590 462 Gene3D Kinase associated domain 1, KA1 309 434 - -
Cca01g00590 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cca01g00590 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00590 462 CDD CIPK_C 315 429 - -
Cca01g00590 462 PANTHER - 2 452 - -
Cca01g00590 462 Pfam NAF domain 312 369 IPR004041 GO:0007165
Cca01g00590 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00590 462 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00590 Cca-Chr1 7479319 7482177 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00590 1 439 CBL-interacting serine-threonine protein kinases AT5G58380 66.004 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca01g00590 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00590 - K07198 gmx:100790905 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00590 01 7479319 7482177 Cca01g00590 01 7479319 7482177 ECH
Cca05g01345 05 31504274 31506993 Cca01g00590 01 7479319 7482177 ECH
Cca07g01725 07 43346196 43350123 Cca01g00590 01 7479319 7482177 ECH
Cca01g00590 01 7479319 7482177 Cca05g01345 05 31504274 31506993 PCT