Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00586 ATGCCGGAGATCGAGGCCACGGCGGCACAGGCGGCGGAGAACGGCGCGCTGTTCGGGAAATACGAGCTCGGGCGCATGCTGGGGTGCGGCGCGTTCGCGAAGGTGCACTACGCCCGCAACGTGCAAACGGGGCACAGCGTGGCCGTTAAGATCATAAACAAGAAGAAGCTGGCCGGAACGGGCCTGGCCGGGAACGTGAAGCGCGAGATCGCGATCATGAGCAGGCTCCACCACCCGAACATCGTGCGCCTCCACGAGGTGCTGGCCACCAAGTCCAAAATCTACTTCATCATGGACTTCGTTCGCGGAGGGGAACTCTTCGCCAAAATATCCAAGGGCAGATTCTCCGAGGATCTCAGCCGCAGGTACTTCCACCAGCTCATCTCCGCCGTCGGCTACTGCCACTCCCGCGGCGGTTTCCACCGTGACCTCAAGCCCGAAAATTTACTCCTCGACGAGAATGGGGATCTCCGGGTCTCCGATTTCGGCTTGAGTGCCGTCAGGGATCAGATCCGACCCGATGGACTGCTCCACACTCTTTGCGGCACCCCTGCTTACGTGGCACCCGAGATTTTGGCCAAAAAAGGTTACGATGGTGCCAAGGTTGATGTATGGTCATGCGGGGTGGTTTTGTTCGTTCTGGCAGCGGGTTACCTACCTTTCAACGACCCGAATTTGATGGTAATGTATAAGAAAATCTACAAGGGCGAGTTCCGGTGTCCGCGGTGGATGTCGCCGGAGCTGCGGCGGTTTTTGGCGAAGTTGCTGGACACCAACCCGGAAACGAGGATCACCGTGGATGGCATGACCCGTGACCCGTGGTTCAAGAAGGGTTACAAAGAGATCAAATTTCACGAGGAGGATTACCAACCCGGTTCGGTCCGGTTCGGGCCCAAGGACGAGAGGGTGCTCGATTTGAACGCCTTTGACATCATTTGTTTCTCTTCCGGTTTGGATTTGTCCGGTTTGTTCGGCGCCTCGGTCGAGGGGGAGCGGCTCGTGACGCCTGAGTCGCCGGAGAGGGTTCTGGCCGCCGCGGAGGACGCCGGGGCCGCCGCGGGGATGGCGGTGCGCTGGAAGAAGGAGTGTGGGGTCGAGTTGGAAGGGCTCAACGGGAGGTTCGGGATCGGGGTGGAGGTTTACCGCCTCACGCCGGAGCTCACGGTGGTGGAGGTCCGGAGGAGGGGCGGCGACGCCCTGGAGTTGAGGGCTGTGTGGGAGGAGAGGCTGAAGCCTTTGTTGGTTGGCGGTGCGACGACGTCGTCTCATGGTGGACAACTGCTATTATAA 1290 0.6008 MPEIEATAAQAAENGALFGKYELGRMLGCGAFAKVHYARNVQTGHSVAVKIINKKKLAGTGLAGNVKREIAIMSRLHHPNIVRLHEVLATKSKIYFIMDFVRGGELFAKISKGRFSEDLSRRYFHQLISAVGYCHSRGGFHRDLKPENLLLDENGDLRVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLAKLLDTNPETRITVDGMTRDPWFKKGYKEIKFHEEDYQPGSVRFGPKDERVLDLNAFDIICFSSGLDLSGLFGASVEGERLVTPESPERVLAAAEDAGAAAGMAVRWKKECGVELEGLNGRFGIGVEVYRLTPELTVVEVRRRGGDALELRAVWEERLKPLLVGGATTSSHGGQLLL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00586 429 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00586 429 Gene3D Transferase(Phosphotransferase) domain 1 11 302 - -
Cca01g00586 429 SUPERFAMILY Protein kinase-like (PK-like) 18 287 IPR011009 -
Cca01g00586 429 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cca01g00586 429 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00586 429 CDD CIPK_C 307 414 - -
Cca01g00586 429 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00586 429 PANTHER - 1 422 - -
Cca01g00586 429 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 422 - -
Cca01g00586 429 Pfam NAF domain 306 358 IPR004041 GO:0007165
Cca01g00586 429 Gene3D Kinase associated domain 1, KA1 303 416 - -
Cca01g00586 429 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00586 Cca-Chr1 7454766 7456253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00586 1 415 CBL-interacting serine-threonine protein kinases AT2G30360 65.258 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca01g00586 Pkinase 5.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00586 - K12761 gmx:100799169 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00586 01 7454766 7456253 Cca01g00586 01 7454766 7456253 ECH
Cca01g00586 01 7454766 7456253 Cca05g01347 05 31530556 31532572 PCT