Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00584 ATGTCTTCATTGTTATTATCAGCATTTCGTTCCTCAAAGAAATCTAAGGACAAAGATAGGTTACCAGACCTCAGAAGTCCCTTGAATGTGCCTGAAACTAGAGGGGTAGACAAAAGGGAAGCATCTCTCCAAGTGGAAGACCCATGCAGGATTTTTGAGAGATATTTGGTGGAGATGATTGTGGAAGAAGGGAAGATTAAGGACTTGATGGATATGGAAGAACTTCTATACTGTTGGAAAAACCTTAAGTGCCCTGTGTTCATTGATTTAGCTTGTAGATTCTATGTAGAAATCTGCATGGACTTGTTTTCTCCAGCCAGTGAGGAAGGTTGTTCCATTCCTACTAATGATGGCTGA 357 0.4062 MSSLLLSAFRSSKKSKDKDRLPDLRSPLNVPETRGVDKREASLQVEDPCRIFERYLVEMIVEEGKIKDLMDMEELLYCWKNLKCPVFIDLACRFYVEICMDLFSPASEEGCSIPTNDG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00584 118 MobiDBLite consensus disorder prediction 1 41 - -
Cca01g00584 118 MobiDBLite consensus disorder prediction 11 25 - -
Cca01g00584 118 Pfam Transcriptional repressor, ovate 46 103 IPR006458 -
Cca01g00584 118 PANTHER TRANSCRIPTION REPRESSOR OFP17 19 109 IPR044686 GO:0045892
Cca01g00584 118 ProSiteProfiles OVATE domain profile. 41 101 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00584 Cca-Chr1 7407365 7408072 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca01g00584 Ovate 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00584 - - pvu:PHAVU_006G076900g 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00584 01 7407365 7408072 Cca01g00584 01 7407365 7408072 ECH
Cca01g00584 01 7407365 7408072 Cca05g01351 05 31610297 31611527 PCT