Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00583 ATGGGAAACAACAGGTTCAGATTGTCTGATATGATGCCAAATGCATGGTTTTATAAGCTCAAAGACATGAGCAAATCAAGGAAGAGAAATGGCCCTCATGCTATGAAGAACAAAGTAACCTCACCAACAACAACATCCCAAAGGTGCTCAAATTATTTCCCCAGTGAACCAAACATAGCTGGTAAGTTATACAACTCTCCTATTTTCACTAAACACTCAGACAACACATTCTCTGATTCACCAAGAAGGTCATCATCCAAGAGAAGGGGTAAGAGAAAAACCATTTACAAGCCTTCTCCCACCACACTTGTCTCTTCACCAGTCATAGAAAGTTTTAGTTGTCATTCCACAAACAATTGGATCAAGCCAAATCAACCTCATTCTCCAGACTATTATCTCTCCTCCTTAGAGAGTTCTTCTGAATCAAACAATGAATATGTTTCATCCGAGTCTGAGTGTGATAAGTTCACCATTCCTGACCTGCTTAATGGGGTAGCCTCTGAATGCAGTTGTAGAGTTAGCTCTTCCACCAACGACATCATCATTGACATGAAAAATGAACCCTTCCCTGAAAATCTTGATGGCTTTGATACAATTTCACAACTAGGCCTTGCTCCAATATTGACAAAGCCAGTGAAGTTTGATGACAAGGTCAACGAAGCCACTGAGTTGAGAAGATCAACTCTATTTGATGAGGTAAAGGCTCATCAATCTCTATCTGTCAAAGTTGGAAAAGAGGAAAGCAGTAGAACTAAGAGAGAGAGAAAAACAAGTTCAATTGCTAGAATTTCATCTGCTAACTCTACAGAATTTCCAGAGGGATTTGCAGTTGTTAAGTCCTCACTTGATCCACAAAGAGACTTCAGGGACTCAATGGTGGAGATGATTGTGGAGAACAATATTTGTGCGTCGAAAGATTTGGAGAACTTGCTTGCCTGCTATCTTTCACTGAATTCAAGGGAATACCATGATCTCATTGTCAAAGCTTTTGAGCAGATTTGGTATGACATGGCTCAACTCAGAATGTAA 1029 0.3994 MGNNRFRLSDMMPNAWFYKLKDMSKSRKRNGPHAMKNKVTSPTTTSQRCSNYFPSEPNIAGKLYNSPIFTKHSDNTFSDSPRRSSSKRRGKRKTIYKPSPTTLVSSPVIESFSCHSTNNWIKPNQPHSPDYYLSSLESSSESNNEYVSSESECDKFTIPDLLNGVASECSCRVSSSTNDIIIDMKNEPFPENLDGFDTISQLGLAPILTKPVKFDDKVNEATELRRSTLFDEVKAHQSLSVKVGKEESSRTKRERKTSSIARISSANSTEFPEGFAVVKSSLDPQRDFRDSMVEMIVENNICASKDLENLLACYLSLNSREYHDLIVKAFEQIWYDMAQLRM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00583 342 MobiDBLite consensus disorder prediction 36 51 - -
Cca01g00583 342 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Cca01g00583 342 Pfam Transcriptional repressor, ovate 281 337 IPR006458 -
Cca01g00583 342 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 275 337 IPR006458 -
Cca01g00583 342 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 341 - -
Cca01g00583 342 MobiDBLite consensus disorder prediction 72 101 - -
Cca01g00583 342 ProSiteProfiles OVATE domain profile. 277 336 IPR006458 -
Cca01g00583 342 MobiDBLite consensus disorder prediction 26 51 - -
Cca01g00583 342 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 341 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00583 Cca-Chr1 7402418 7403552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca01g00583 Ovate 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00583 - - gmx:100784032 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00583 01 7402418 7403552 Cca01g00583 01 7402418 7403552 ECH
Cca01g00583 01 7402418 7403552 Cca05g01352 05 31613801 31616570 PCT