Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00582 ATGTATTCCCATAAAGGGTGTAAGGAGGATACCAAAGCTGAGCCTCGTTACATGGAAACCGACCCAACTGGTAGATATGCTCGGGTTGGAGATATTCTAGGAAAAGGGGCAATGAAGACAGTATATAAAGCAATTGATGAGGCCCTTGGAATAGAGGTAGCATGGAACCAGGTCAAACTCAATGAGGCACTTCGCAAACCAGAGGACTTGGAGCGGCTCTATTTAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAATCCATCATGAGGTTTTACACCTCTTGGATTGATGTTGACAACAGGACCTTCAATTTCATTACAGAAATGTTTACTTCAGGGACACTAAGAGAATACAGGAAGAAGTATAAGCACATAGGCCTACAAGCAATAAAGAGTTGGGCTCGCCAAATCTTACAGGGTCTTGTTTATCTACATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATATTTGTTAATGGCCATCTTGGACTAGTAAAAATTGGTGACCTAGGTCTAGCAGCAATTCTTCATGGTTCTCAGCCAGCCCACAGTGTTATAGGCACCCCAGAGTTCATGGCACCAGAATTGTACGAGGAGGAATACAATGAACTGGTTGATGTGTATTCATTTGGCATGTGTGTTCTGGAAATGCTCACATCTGATTATCCATATAGTGAATGTGCTAACCCTGCACAGATATACAAGAAAGTGACATCGGGTAAGCTACCAGCAGCATTTTTCCGGATTGAAGACACTGAAGCACAGAAGTTTATTGGAAAATGTCTAGTAAGTGCAGCAAAAAGGCCATCAGCAAAAGAATTGTTGCATGATCCATTTCTTCTGTCTGATGATGCATCATCCATGACAAAGATTGGAACTCAAGAGCCATTTTTAAATTACGGTGAAATGGAAAAGCTTCAATTGAGTGATGATTCACCTAGGAATGAAATGTCAATAACTGGGAAGCTGAATTCAGAAAACGATACAATCTTTCTCAAAGTGCAAATTTCTGACAAGGATGGTTCTTGTAGGAATGTATACTTTCCCTTTGACATACACACAGACACCCCTATTGATGTCGCTATGGAGATGGTGAAAGAATTGGAGATCACAGATTTGAAGCCTACTGATATTGCAAATATGATTGAAGGAGAGATATCTGTGCTGATGCCAAATAGGAGGAATAGTAACTGTTCAGACACCTTCCATACATTCAGTTATCATGATGATGACGACGATGAAGGTCCTCGCCATCATTTCCACTCGATCTCTTCTTGTTCATCACCCCACGAATCAATATCAGGCTCAATAAGTAGAGCTGATGACTTCTTGAATGGATATTATTGGCTTCATGGTGATATACATGATGATGCGAGTTCAATATGCTCTTCACATGGGACATATTCCAACTCAAACTTTTGTTCAGTGGATGACCATGAGGAACACAACAAGGCTTCTACAAGAAAAGATAAACATTCCATCATAAAGAGTCACATGTGTACAAGATTTTCCCCTAATGAAGACCCCCTCACTTTGAATCAGTGTAAAGTTTTAGCAGCATCACAAGCTGGCAAAAGTAAGAGGGTGGTGGACAATCGTAGACTAACAAGGAACAAATCATTGATTGATATGAGGAGCCAGTTACTACACAGATCACTGGTTGAGGAGGTAAACAAGAGAAGGTTATTCAAGACAGTTGGAGCTGTGGAGAATATTGGATTTGTGACACCTTATGAGGTTACCAACAAAAAGTCACAACCATCATGTGCTGGTGCTTTTGATGTGATGAACTCTTCTAGAAGGAGCAAGGGAGAAAACTTTAGAAACAGAAAAGGTTAA 1854 0.4078 MYSHKGCKEDTKAEPRYMETDPTGRYARVGDILGKGAMKTVYKAIDEALGIEVAWNQVKLNEALRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVDNRTFNFITEMFTSGTLREYRKKYKHIGLQAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGLVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECANPAQIYKKVTSGKLPAAFFRIEDTEAQKFIGKCLVSAAKRPSAKELLHDPFLLSDDASSMTKIGTQEPFLNYGEMEKLQLSDDSPRNEMSITGKLNSENDTIFLKVQISDKDGSCRNVYFPFDIHTDTPIDVAMEMVKELEITDLKPTDIANMIEGEISVLMPNRRNSNCSDTFHTFSYHDDDDDEGPRHHFHSISSCSSPHESISGSISRADDFLNGYYWLHGDIHDDASSICSSHGTYSNSNFCSVDDHEEHNKASTRKDKHSIIKSHMCTRFSPNEDPLTLNQCKVLAASQAGKSKRVVDNRRLTRNKSLIDMRSQLLHRSLVEEVNKRRLFKTVGAVENIGFVTPYEVTNKKSQPSCAGAFDVMNSSRRSKGENFRNRKG 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00582 617 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Cca01g00582 617 PANTHER WNK KINASE 23 594 - -
Cca01g00582 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Cca01g00582 617 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00582 617 CDD STKc_WNK 25 285 - -
Cca01g00582 617 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00582 617 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00582 617 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cca01g00582 617 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 594 - -
Cca01g00582 617 SUPERFAMILY Protein kinase-like (PK-like) 28 310 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00582 Cca-Chr1 7389504 7394608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00582 17 588 MAP Kinase Kinase Kinase AT5G58350 58.895 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca01g00582 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00582 K08867 - gmx:100778102 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00582 01 7389504 7394608 Cca01g00582 01 7389504 7394608 ECH