Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00578 ATGACTAGAAAGAAAGTAGACCTTACATACATAACCAATGACTCCAAGAGGAAGACAACATTCAAGAAAAGAAAAATTGGTTTGATCAAGAAAATGAATGAAATTAGCACTCTTTGTGGGATTGAAGCATGTGCTATAATTTACAATCCAAATGATCCTCAACCAGAGGTTTGGCCATCTGACGCAGGAGTCCAAATGGTGCTTTCTAGGTTCAGGAGAATGTCTGAACTAAAACAAAACAAAAAGATGTTGAACCAAGAGAGCTTGTTGAAGCAAATAGTCATCAAATCCCAAGAGCAGTTGAAGAGACTGAGAAGTGAAAATAGGAAGAAAGAAATGTCCCATCTTATTTTTCAATACTTGACTATTGGGGGGATTTTTGACAATCCTAGCTTGATTGATTTGAATGATATCTCATGGTTGATTGATCATAACTTGAATGAAATAGAAAAGAAGATCAATAGGATCCAAATCCAAGAAGTGACACCAATGATTGAAAATGAAGGAGAACGAGGATTCATGCATCATGTCCAAGGGCTAGAGAGCGACATGAACACCTTTCAAAGGCAACATTAA 576 0.3663 MTRKKVDLTYITNDSKRKTTFKKRKIGLIKKMNEISTLCGIEACAIIYNPNDPQPEVWPSDAGVQMVLSRFRRMSELKQNKKMLNQESLLKQIVIKSQEQLKRLRSENRKKEMSHLIFQYLTIGGIFDNPSLIDLNDISWLIDHNLNEIEKKINRIQIQEVTPMIENEGERGFMHHVQGLESDMNTFQRQH 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00578 191 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Cca01g00578 191 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Cca01g00578 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Cca01g00578 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00578 191 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Cca01g00578 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00578 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00578 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g00578 191 Coils Coil 94 114 - -
Cca01g00578 191 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
Cca01g00578 191 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00578 191 PANTHER MADS BOX PROTEIN 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00578 Cca-Chr1 7343467 7344425 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00578 1 153 Type I MADS-box Gene Family AT5G48670 52.288 2.35e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00578 SRF-TF 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00578 - - gmx:100797590 292.352