Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00576 ATGGCCAGAAAGAAGGTGGACCTTACCTACATAGCCAACGACTCGAAGAGGAAGGCAACGTTAAGGAAAAGGAAAAATGGTTTGATCAAGAAAGTTGATGAAATCAGCATCCTTTGCGGCATTGAAGCATGTGCTATAATTTATGTTCCGGAAAACCCTACACCTGAGGTTTGGCCATCTGATTGGGGGGTTCAGAATGTGCTTTCCAGGTTTAGGGGAGTGTCTGAACTGGAACAAAGCAAGAAAATGTTGAGCCAAGAGAGTTTCCTGAGGCACAGGATCATCAAGGCTCAAGAGCAGTTGAAGAAACTAAAGGCTGAAAATAGGAAGAAGGAGATGACCCTTAACATATACCAGTACTTTAATGCTTCTGGAAACATTTTTGATAGTGCCAACATGATTTATCTGAATGATATCGCACACATGACCACTCAAAACTTGCAGGAAATTGACAGAAAAATCAATAGAGACCAACAACCCCAAGACCAAGAGGTTGTGGCACCGGTTGTTCCAGAAGGAGGGGAAATCATGGCTCAGCAGGGAGAACAAGCACAGCTTGTGAATGATCATGTGCAAGTGCCTGAGGCCAATAATGTGAATGCTGTTGGAAACCAGGATTGGCCTGTGGAAATGATCAATGGTGCTGATGGGGACCAGATGTTAACAATGGATGATGTTAATCTTCCAAGTGGTTGGCTTAACCAATATATCCCTTGA 717 0.4351 MARKKVDLTYIANDSKRKATLRKRKNGLIKKVDEISILCGIEACAIIYVPENPTPEVWPSDWGVQNVLSRFRGVSELEQSKKMLSQESFLRHRIIKAQEQLKKLKAENRKKEMTLNIYQYFNASGNIFDSANMIYLNDIAHMTTQNLQEIDRKINRDQQPQDQEVVAPVVPEGGEIMAQQGEQAQLVNDHVQVPEANNVNAVGNQDWPVEMINGADGDQMLTMDDVNLPSGWLNQYIP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00576 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cca01g00576 238 PANTHER MADS BOX PROTEIN 2 163 - -
Cca01g00576 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00576 238 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Cca01g00576 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00576 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00576 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g00576 238 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cca01g00576 238 Coils Coil 87 114 - -
Cca01g00576 238 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00576 238 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Cca01g00576 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00576 Cca-Chr1 7310515 7311525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00576 1 211 Type I MADS-box Gene Family AT5G48670 41.860 2.32e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00576 SRF-TF 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00576 - - vra:106752448 249.595