Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00575 ATGCCTAGGTCAAAGGTGAAACTCGCGTTCATAGTCAATAATTCTACAAGGAGGGCAGCATACAGGAAAAGGAAGAAGGGAATGCTGAAGAAGATTGATGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATAATTTATAGTTCCTATGATCCTGAACCAGTGGCTTGGCCATCTGAACGGGGTGTCCATAAGGTGTTGGGAAGGTTAAAGAATATGTCTGAATCGGATCAGAATAAAAAAATGGTGAATCAAAAGAGTTTGATTACAAAGAAGATTCAAAAGTGTCAAGAACAGTTGGATAAACTTGTGAAGGAAAACAAAAAGAAGGAAATGACCATGTTTATGATTCATTGCCTTAATGCTGGGACGGTTCTACCTGATAGCATAAAGTTTGATATGAATAATAGTCATGGGTTGGATATGGTTGCTAATGCCATGCAATGGCAGCTATTTAAGGATTGGCTTAATGATGATGATGAGACAGTAGTGCCTCCATCATTTGGAGATGCTAATTAA 522 0.3889 MPRSKVKLAFIVNNSTRRAAYRKRKKGMLKKIDELSTLCGIEACAIIYSSYDPEPVAWPSERGVHKVLGRLKNMSESDQNKKMVNQKSLITKKIQKCQEQLDKLVKENKKKEMTMFMIHCLNAGTVLPDSIKFDMNNSHGLDMVANAMQWQLFKDWLNDDDETVVPPSFGDAN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00575 173 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Cca01g00575 173 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Cca01g00575 173 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00575 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Cca01g00575 173 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 126 - -
Cca01g00575 173 PANTHER MADS BOX PROTEIN 4 126 - -
Cca01g00575 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00575 173 Coils Coil 87 114 - -
Cca01g00575 173 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cca01g00575 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00575 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00575 Cca-Chr1 7292074 7292595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00575 1 121 Type I MADS-box Gene Family AT5G48670 51.240 2.74e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00575 SRF-TF 9.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00575 - - ccaj:109816884 354.369