Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00574 ATGGCCAGGAAGAAGGTGAAACTGGCGTTCATAGCCAATGATTCCGAAAGGAAGATATCATACAGGAAGAGGAAGAAGTCAGTGCTGAAGAAAACTGAAGAAATCAGCACCATTTGTGGTGTTGAAGCATGTGCTATAGTTTACAATAGTTCCTATGATCCCGAGCCACAGGTTTGGCCATCCGAATCAGGTGTCCAACAAGTGCTGAGAAAGTTCAGGAGTTTGCCTGAATGGGAGCAGATGCGGAACATGGTGCAACAAGAAAACTTCATTAGACAAAGTATTCATAAACAAAGAGAGAAGGTTAAAAAGCTTGCGAAGGACAACAAACAAAAGGAGATGACCATGTTAATGTATCAGTGCCTCGATGCAGGAAGGGTTGAGCTTAATAACAACGTGAACGTGGCTGACTTGAAGGATCTTTCATCTGTCATTGAACAGAAGCTACAAAGCATTACCACAAAGTTGGAAATGTTGAATGTTAATGAGATAACATCGTACCAACCCCAAATGCAAGAACCAGCACACCAGCACCAGATGCAAATGCAAACACCAGTGCCATATCAGCCCCAGATTGGAACACCAGCataccaacaacaaatacaaatgcaaataccacaaaaccaacaacaaatacaaatgcaaataccacaaaaccatcaacaaatacagatgcaaatacccgcataccaaccccaaccccagatgcaaattcaaacacaaGCATACCAGTCTCAAATTGAAACACCAACATATCAGCAACAGATGCAGATGCTGCAAACACCGGCATACCAACCCGAGGTACAGAGGCAAACAACAACATATGTACCCCAGAATGAAGGACCATCAAACCAACCCCAGATGCAAACACGTGCATTGGCAGTAGAGCCCGAAGAAATGACTTTGTTGAATATGAACACTAACCCTATGCAAAGCCAGTGGTTTATGGACACCTTTCTTATTGGTAATGGGGATGAGACAATGTTTCCTCCATTTGGGGATGATCTCCCATTCTGA 1017 0.3795 MARKKVKLAFIANDSERKISYRKRKKSVLKKTEEISTICGVEACAIVYNSSYDPEPQVWPSESGVQQVLRKFRSLPEWEQMRNMVQQENFIRQSIHKQREKVKKLAKDNKQKEMTMLMYQCLDAGRVELNNNVNVADLKDLSSVIEQKLQSITTKLEMLNVNEITSYQPQMQEPAHQHQMQMQTPVPYQPQIGTPAYQQQIQMQIPQNQQQIQMQIPQNHQQIQMQIPAYQPQPQMQIQTQAYQSQIETPTYQQQMQMLQTPAYQPEVQRQTTTYVPQNEGPSNQPQMQTRALAVEPEEMTLLNMNTNPMQSQWFMDTFLIGNGDETMFPPFGDDLPF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00574 338 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Cca01g00574 338 Coils Coil 95 115 - -
Cca01g00574 338 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Cca01g00574 338 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00574 338 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00574 338 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Cca01g00574 338 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00574 338 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 259 - -
Cca01g00574 338 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cca01g00574 338 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Cca01g00574 338 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00574 Cca-Chr1 7289041 7290057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00574 1 159 Type I MADS-box Gene Family AT5G48670 50.314 1.25e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00574 SRF-TF 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00574 - - ccaj:109816885 602.823