Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00573 ATGCCAAAGACAAAGGTGAAACTCGCCTTCATAACAAATGATGCCGCAAGGAAGGCAACATACAAGCAAAGGAAGAAGGGAATTCTGAAAAAGATTGAGGAACTTAGTACCTACTGTGGTATTGAATCATGTGCTATAATTTATGGCCCCTTTGTAGAGGCGCCAGAGATTTGGCCATCTGAATCAGGTGTTCAGAATGTTCTGGGGAAATTCAGGACTATGACTGAATGGGAACAAAACAGGAAGATGCTGGACCAAGAGGGTTTCATTGAACAAAACATTGTAAAGGGAAGAGAGAAGGTGAAGAAACTTGCCAAGGAGAATAAGGAAAAGGAGATGAACATGTTGATGCATCAGTGCCTTAAATCTGGGAAGATTGATCCTGATAATTACATGATGGCAACTGATTTTGTTAATCTTTCAGCAGTGATTGACAAGAAGCTGAAGGAGATTAATAGAAAGTTGGAAACATTGAATGTTAATGAGATGCCACCACACCAACCCAAGATGCAAGCAACAACAAACCATCCTCATCCCCAGACTGAAGCAACATCAAAACAACACCAGACACAAGAACCAACACAAACAGTGAAGCCTGAAGAAATGACTCCACTGAATTATGACCAAGAACCAGATTTGATCCCTAACCCTATGCAACGTCAATTGTTAATGGAGAACTTCATTATTGGTAATGAGAAAGAGACATCATTGCCTCCATTTAGAGATGCTAAAGTCCCTCTCTAA 744 0.4046 MPKTKVKLAFITNDAARKATYKQRKKGILKKIEELSTYCGIESCAIIYGPFVEAPEIWPSESGVQNVLGKFRTMTEWEQNRKMLDQEGFIEQNIVKGREKVKKLAKENKEKEMNMLMHQCLKSGKIDPDNYMMATDFVNLSAVIDKKLKEINRKLETLNVNEMPPHQPKMQATTNHPHPQTEATSKQHQTQEPTQTVKPEEMTPLNYDQEPDLIPNPMQRQLLMENFIIGNEKETSLPPFRDAKVPL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00573 247 MobiDBLite consensus disorder prediction 164 202 - -
Cca01g00573 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cca01g00573 247 PANTHER MADS BOX PROTEIN 3 171 - -
Cca01g00573 247 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00573 247 Coils Coil 94 114 - -
Cca01g00573 247 MobiDBLite consensus disorder prediction 159 208 - -
Cca01g00573 247 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cca01g00573 247 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Cca01g00573 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 171 - -
Cca01g00573 247 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Cca01g00573 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00573 Cca-Chr1 7275055 7275890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00573 1 158 Type I MADS-box Gene Family AT5G48670 48.734 1.62e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00573 SRF-TF 7.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00573 - - gmx:106797065 243.047