Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00572 ATGACCCGGAGAAAGGTGAAACTTGCTTTCTTGAGCAATGATTCCCAGAGGAAGACATCATATAGGAAAAGAAAGAAGTCACTGCTGAAGAAAACTGAGGAAATATGCACCCTTTGTGGGATTGATGCATGTGCTATAGTTTATGGCCTTGATGATCCTGAGCCAGTGATTTGGCCATCTAAATCAGGTGTCCAAAATTTGCTGAGAAGATTCAGGACACTGCCTGAGTGGGAGCAGACGAGGAAGATGGTGGATCAAGTGAGTTTCATCCAACAAAGCATCACCaaagagaaggagaagatgaagaagctagtgaaggagaaCAAGGACAAAGAAATGACCTTATTGATGTATCAGTGTCTCAATGAAGGGAGGGTTGTGGCTGATAATAACATGACAACAGCTGATTTTTGTGTCCTTTCATCGGTGATCGACCAGAACCTGAGGGAGATTACCAGAAGGTTGGAAACTTTGAATATTGGAGAGATGACACCGCATCAACCACAGATTGAACCTGCATCAAACCAACCCCAGATGCAACCACCAGCACCAGAAGTGGCTCCAACCGAGGAAATGAGTCTGTTGAATTATGACCGAGGGTTGGATATGATCAATGCTAACCCTTTGCAAAACGAACAGTGGTTTATGGACTTCTTTAATGATAACAGGGATGAGACAACATTTTGGCCTAATCCATTTATTTGA 705 0.4099 MTRRKVKLAFLSNDSQRKTSYRKRKKSLLKKTEEICTLCGIDACAIVYGLDDPEPVIWPSKSGVQNLLRRFRTLPEWEQTRKMVDQVSFIQQSITKEKEKMKKLVKENKDKEMTLLMYQCLNEGRVVADNNMTTADFCVLSSVIDQNLREITRRLETLNIGEMTPHQPQIEPASNQPQMQPPAPEVAPTEEMSLLNYDRGLDMINANPLQNEQWFMDFFNDNRDETTFWPNPFI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00572 234 MobiDBLite consensus disorder prediction 165 185 - -
Cca01g00572 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Cca01g00572 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00572 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Cca01g00572 234 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 220 - -
Cca01g00572 234 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Cca01g00572 234 Coils Coil 94 114 - -
Cca01g00572 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00572 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00572 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00572 234 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cca01g00572 234 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00572 Cca-Chr1 7263885 7264589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00572 1 200 Type I MADS-box Gene Family AT5G48670 41.791 1.89e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00572 SRF-TF 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00572 - - gmx:100795996 243.817