Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00571 ATGACCAGAAAAAAGGTGAAACTTGCATTCATAGTCAATGATTCTGCGAGGAAGACGACATATAAAAAGAGGAAGAAAGGAATGCTGAAGAAGGTTGAGGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATTGTTTATAGTCCCTTTGAACGTGAGGCTGAGGTTTGGCCATCCGATGAGGGTGTCCAAAATGTGTTGGGAAAGTTCAGGTCTATGCCTGAGTTAGAGCAAAGCAAGAAGATGGTGAACCAGGAAGGGTTCATTGGACAAAGGATCCTGAAGAGCAAGGAGCAACTGATGAAACTAGTGAAGGATAATAGAGAGATGGAAACAACCACGTTCATGTTTCAATGCCTTAGTGTGGAGAGTGTTGAGCCTAATAATAACACACATGTGACTGATTTGAATGATCTTTCTTCAGTGATTGAAGTGACTCTTAAGGAGATTAGTAAAAGGTTAGAAACAATGAATGTTAATGAGACGACCACGACCCCAAACCAATCCCAATTGCAAGCACCATCGTATCAACTCCAGATGCCGACACAAGCATACCAATCCATGCAGACACCAACGTTGTCAATGCCAAAGTCAGAAGAAATGACAATGATGAATTTCGGCCATGAGTTGGATACGAATGCTAATCCCATGCAAAGGCAGTTTTTCATGGACTTGCTCAATGGTAATGGTCGGGATGAGATGATAATGCATCCTCCTTCACTTGTTGATGCTGATCTCCGACTCCAAACTGGCTTCTGGCCTAACATGTTACCTTAA 780 0.4269 MTRKKVKLAFIVNDSARKTTYKKRKKGMLKKVEELSTLCGIEACAIVYSPFEREAEVWPSDEGVQNVLGKFRSMPELEQSKKMVNQEGFIGQRILKSKEQLMKLVKDNREMETTTFMFQCLSVESVEPNNNTHVTDLNDLSSVIEVTLKEISKRLETMNVNETTTTPNQSQLQAPSYQLQMPTQAYQSMQTPTLSMPKSEEMTMMNFGHELDTNANPMQRQFFMDLLNGNGRDEMIMHPPSLVDADLRLQTGFWPNMLP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00571 259 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 208 - -
Cca01g00571 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cca01g00571 259 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Cca01g00571 259 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cca01g00571 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Cca01g00571 259 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00571 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00571 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00571 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g00571 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00571 259 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00571 Cca-Chr1 7239236 7240015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00571 1 196 Type I MADS-box Gene Family AT5G48670 49.495 4.70e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00571 SRF-TF 9.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00571 - - ccaj:109816875 519.235