Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00570 ATGACTAGAAAAAAAGTAAAACTCTCATTCATCGCCAATGATTCTGCAAGGAAGGCAACATACAAAAAAAGGAAAAAGTCATTGTTGAAGAAGGTTGAGGAACTTAGCACTCTATGTGGCATTGAAGCATGTGCTATAGTTTATAGCCCCGATGATCCTCTACCACAGGTTTGGCCTTCTGATAACGGTGTTGAAAGGGTGGTGGAAAGATTCAGGATTATGCCTGAGTTGGAGCAAAGCAAGAAGATGGCGAACCAAGAGAGTTTCATTGGACAAAGGATCTTGAAGAGTAAGGACCAAGTAATGAAACTTATGAAGGACAATAGGGAGAAGGAGATGACCATGTTCATGTTTCGTTGTCTTAATGTAGGGAGGGTTCTTCCTGATAATAACATGACTACTAGTGATTTAAGTGATCTTTCATCGATGATCGAACAAAACTTGAGGGACATTAATAAAAGGTTGGAAACTCTAAGTGCTAATGAGATGACAACAAACCAACCTCAGGTGCAAACTCCAGCATTGGCTGTACCAAAGACTAAAGAAACAACATTGGTGAATTCTGGCTATGGGTTGGATATGAATGCTAACCCCGTGCCAAGGCAAATGTTTATGGACTTGCTTAATGGCAATGGAAATCAGGCAATAATGCCTCATTTTGGAGATGCTGATCTTCAACTTCAAACTAGTTTTTGGCCTAACCTATTACCTTGA 714 0.4006 MTRKKVKLSFIANDSARKATYKKRKKSLLKKVEELSTLCGIEACAIVYSPDDPLPQVWPSDNGVERVVERFRIMPELEQSKKMANQESFIGQRILKSKDQVMKLMKDNREKEMTMFMFRCLNVGRVLPDNNMTTSDLSDLSSMIEQNLRDINKRLETLSANEMTTNQPQVQTPALAVPKTKETTLVNSGYGLDMNANPVPRQMFMDLLNGNGNQAIMPHFGDADLQLQTSFWPNLLP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00570 237 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Cca01g00570 237 PANTHER MADS BOX PROTEIN 2 172 - -
Cca01g00570 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00570 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00570 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g00570 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Cca01g00570 237 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 172 - -
Cca01g00570 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00570 237 Coils Coil 18 38 - -
Cca01g00570 237 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Cca01g00570 237 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Cca01g00570 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00570 237 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00570 Cca-Chr1 7229209 7229922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00570 1 204 Type I MADS-box Gene Family AT5G48670 47.032 1.73e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00570 SRF-TF 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00570 - - gmx:106797065 315.464