Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00569 ATGGACAGCGACATTTCCCGGTGGGTCCTCGAATTCCTCCTCCGCAGCTCCGTCCCCGATTCCCTCATCCAGAAAGCCCTAACCTCACTCCCTCTCTCCGGCGCCGATCTCCGCCTCAAGCACACCCTCCTCCTCCGCACCCTCCACACCCTCCTCCTCCACGCCTCCCTCCCCGACACCGCCCTCCACATCCTCGAGCTCCTCGAGCCCCACTCCAACGACGCCTCCGCCGCCTCCCTCCGCCGCGCCTACCGCGCCGTCGCCGTCGAGTGCACCGTCAAGTACCTCGCCGCCGTCCCCGACGCCCCCTCCGCCGAGTACTCCGCCGCCGTCGACCGCATCTGGCGCGGCCGCGTGGCGGCGCTGGAGGCGCGCCGCAGCGGGATCGCCTCCTCCGGCGAGTTGGCGCGGTGGCGCGACGACGTGGAGGCCGCGGTTTGGGACCCTAGGGTTCGCGAGAGGCTCGCGGGGCTGAATAGTCGGAAGGAAGCGTTTGATGAGGTGGGGGCGTATTTGAAGGAAGCGTGGGAAGCGATGGGTCCTTCGTTTCTGGAATCGATGTCGAATGCCAAGGGTCAAGAAGGGTTGGAGAATTCGGCGAAGGAGAAAGAGCGTTCtgattatgatgatgatgatggtgatgcatgcatgaagaATTTGGCAACGCGTGATGGAAATGAGGAAGTGGGTGGGGGTGACTTGCCTCCCCAGAGAGTTGTACGCATGTCCCCAATAGAAACTCAGAAACGGAAATCTCAGCTTAAACACAAGCACTCTGCACTTCGTACATGTAATAGGGGAGTTAAAATATCTGATCCTGAGGAAGTGGAGCCAGCAAAATGGAAGAGCAAACATGATCCTGTACCTAGTGCCGAAGCTAGTAAAGTTCGGGAATCCCTTAAATCAAGTTCTTTGGAGTTACAAGCATTGGTCGAGGATCCTCTTCCTGATGCATTGCATAAATCTGAAGTTATAAGATCGAAATCTGCAACAAGAGATACGAATATTGAACCACCTATTGAAAACCAGAGTGAAGATGTAGATGTACCAGATCCAGATGTTTGCAGAAGTATTGTACTTTTTCAGCCTAAAGATGCCAATCTTGTTAAGAAGTCTCCCGATCCTTGTAGTAATGTTCATCAGCCTAACATAATGGAACGGAATAGAACTGCACGTACCTATGAGTGGGAGGATTCAACAGATAACTCATCACAAGCAAGACAGACAAGGAGGAGGAAAAGGAAATGGTCTTCGTTAGAAGAGGAAACACTAAGGGCCGGTGTACAAATGTTTGGAGAAGGAAACTGGGCGACAATCCGAAGTTTTTACAGTAACGTATTTGAAAATAGAAGTGGAGTTGATCTAAAGGACAAGTGGAGAAACATGATACGGTGA 1395 0.5219 MDSDISRWVLEFLLRSSVPDSLIQKALTSLPLSGADLRLKHTLLLRTLHTLLLHASLPDTALHILELLEPHSNDASAASLRRAYRAVAVECTVKYLAAVPDAPSAEYSAAVDRIWRGRVAALEARRSGIASSGELARWRDDVEAAVWDPRVRERLAGLNSRKEAFDEVGAYLKEAWEAMGPSFLESMSNAKGQEGLENSAKEKERSDYDDDDGDACMKNLATRDGNEEVGGGDLPPQRVVRMSPIETQKRKSQLKHKHSALRTCNRGVKISDPEEVEPAKWKSKHDPVPSAEASKVRESLKSSSLELQALVEDPLPDALHKSEVIRSKSATRDTNIEPPIENQSEDVDVPDPDVCRSIVLFQPKDANLVKKSPDPCSNVHQPNIMERNRTARTYEWEDSTDNSSQARQTRRRKRKWSSLEEETLRAGVQMFGEGNWATIRSFYSNVFENRSGVDLKDKWRNMIR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00569 464 SMART sant 412 464 IPR001005 -
Cca01g00569 464 Gene3D - 403 464 - -
Cca01g00569 464 ProSiteProfiles Myb-like domain profile. 408 463 IPR001005 -
Cca01g00569 464 MobiDBLite consensus disorder prediction 326 349 - -
Cca01g00569 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 410 464 IPR017930 -
Cca01g00569 464 Pfam Myb-like DNA-binding domain 413 462 IPR001005 -
Cca01g00569 464 PANTHER MYB TRANSCRIPTION FACTOR 1 464 - -
Cca01g00569 464 SUPERFAMILY Homeodomain-like 410 463 IPR009057 -
Cca01g00569 464 MobiDBLite consensus disorder prediction 389 416 - -
Cca01g00569 464 CDD SANT_TRF 414 464 - -
Cca01g00569 464 MobiDBLite consensus disorder prediction 196 213 - -
Cca01g00569 464 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00569 Cca-Chr1 7220095 7226521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00569 416 463 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 3.96e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g00569 Myb_DNA-binding 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00569 - K11111 vun:114187915 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00569 01 7220095 7226521 Cca01g00569 01 7220095 7226521 ECH