Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00567 ATGGCCACACAAGCGCAAGATCCGCCTTCAAACCCTAACCCTAATTCCAATGCCACGTCAGCAACGCCATCTTCTTCCTTTTATATGCGCTCCGCCGCCGGTAACGCCATTTCCGCCGCTCCCATCGCCGGCTCCGGCGAGCACTCGCACCACCGCAGGGCGCACTCCGAGGTCAATTTCCGGCTGCCGGACGACATAATGGACCTGTCGCCGTCGGATCCGTTCAACGGCGGATCCTCCACGGCGAGCTTCGAGGAGATCGGATCCGAGGACGACCTCTTCTCCACCTACATTGACGTCGAGAAGCTcggcggcggcgccaacggcggcgctcgcggcggAAACGGATCGGATCAGTGCGGTTACGGAAACGGCGCTGGTACGAGCGGCCACAACGACGGCGAGAAGAGTCCGAGCGCGCGGCCGAGACACCGGCACAGTAGCTCCGTCGACGGTTCCACGTCGACGAGCATGTTCGGAGAGATCATGGAGGCGAAGAAAGCCATGCCTCCTGATAAGCTCGCGGAGCTTTGGAACATTGATCCCAAGCGTGCCAAGAGAATACTGGCTAATCGGCAATCTGCTGCGCGTTCAAAAGAAAGAAAGGCACGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAGACTGAAGCCACAACACTTTCTGCCCAACTCACTTTGTACCAGAGGGATACAACTGGTCTAAGTTCTGAAAATACCGAGCTTAAGCTTCGTCTACAAGCCATGGAACAACAAGCACAGCTTCGTGATGCCCTTAATGATGCATTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGCGAGGCATTGAACCACTCCGAGTCTTTCAATCTAGGAATGCACCAAATGCCATTTCCAGGGTCAACTTTCTTTTCAATCCCGCCACATTCAGGTCCTCCTGGTCACCAGAACATTCAGTTGCCTCCATTTGGCCACTCCCCAAGTAGCGTGTCAACTCATCAGCTGCAACAAACAAATTCTCACCAAATCTCAGATATATTGCAAAACGACCAACTTGGTCGTTTGCAGGGACTTGACATTAGTAGCAAAGGATCACCCATGGTGAAGTCTGAAGGCCCCTCAATATCTGCAAACGAGAGTAGCTCTACATTTTGA 1146 0.5105 MATQAQDPPSNPNPNSNATSATPSSSFYMRSAAGNAISAAPIAGSGEHSHHRRAHSEVNFRLPDDIMDLSPSDPFNGGSSTASFEEIGSEDDLFSTYIDVEKLGGGANGGARGGNGSDQCGYGNGAGTSGHNDGEKSPSARPRHRHSSSVDGSTSTSMFGEIMEAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEALNHSESFNLGMHQMPFPGSTFFSIPPHSGPPGHQNIQLPPFGHSPSSVSTHQLQQTNSHQISDILQNDQLGRLQGLDISSKGSPMVKSEGPSISANESSSTF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00567 381 MobiDBLite consensus disorder prediction 121 135 - -
Cca01g00567 381 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 244 IPR004827 GO:0003700|GO:0006355
Cca01g00567 381 MobiDBLite consensus disorder prediction 318 337 - -
Cca01g00567 381 MobiDBLite consensus disorder prediction 39 84 - -
Cca01g00567 381 Pfam bZIP transcription factor 183 241 IPR004827 GO:0003700|GO:0006355
Cca01g00567 381 SMART brlzneu 179 243 IPR004827 GO:0003700|GO:0006355
Cca01g00567 381 MobiDBLite consensus disorder prediction 364 381 - -
Cca01g00567 381 SUPERFAMILY Leucine zipper domain 183 234 IPR046347 GO:0003700|GO:0006355
Cca01g00567 381 MobiDBLite consensus disorder prediction 116 157 - -
Cca01g00567 381 CDD bZIP_plant_RF2 184 233 IPR044759 GO:0003700|GO:0006355
Cca01g00567 381 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 378 - -
Cca01g00567 381 MobiDBLite consensus disorder prediction 299 337 - -
Cca01g00567 381 MobiDBLite consensus disorder prediction 46 62 - -
Cca01g00567 381 Gene3D - 182 235 - -
Cca01g00567 381 PANTHER BZIP TRANSCRIPTION FACTOR 1 378 - -
Cca01g00567 381 Coils Coil 199 226 - -
Cca01g00567 381 MobiDBLite consensus disorder prediction 1 27 - -
Cca01g00567 381 MobiDBLite consensus disorder prediction 354 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00567 Cca-Chr1 7196373 7199840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00567 9 381 bZIP Transcription Factor Family AT2G40620 51.899 2.53e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca01g00567 bZIP_1 4.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00567 - - gmx:100775607 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00567 01 7196373 7199840 Cca01g00567 01 7196373 7199840 ECH