Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00563 ATGGATCAGACTCCTTTTCTTTTGCTGTCAAATATTCAAGGCTTTTGGCCATCTTTGCTAGTTATACTCACTACCTTCATCGTTACGGTCAAAGCCCTAAAAGCTCACTTCGTTGAGAACTATTCAAAGAAACCAAAGCCAAAACTCCCCCCAGGCCCCAAACCATGGCCAATTGTAGGCAACCTCCCTGAAATGCTTGCAAACAGACCTACACATAAGTGGATACACAAACTCATGAAAGAAATGAACACTGAAATTGCATGTATCCGCTTAGGAAATGCCTATGTTGTCCCAGTGACATGTCCCACCATTGCTAGTGAGTTCTTGAGAAGACATGATGCAACTTTTGCATCAAGATCACTAAGTGTGTGCACTCATCTCATCAGTGCTGGATATTCATCAGCAATTTTTGCGCCCTTTGGAGACCAATGGAAGAAAATGAAGAAAATCATAACCAATGATTTGCTTTCCCCACACAAGCACCAATGGCTTCATGGCAAAAGGACTGAAGAAGCTGACAACCTTATGTTTTATGTCTACAACAAATGCAAAAGTGTGAATGACGATGGTGTTAGTGGCCTTGTGAATATCAGGAATGCTACAAGGCACTATTGTAGTAACTTGATTAGGAAAATCATTTTTAATACAAGGTATTTTGGTAAGGGTAGGATGGATGGAGGGCCTGGTCTTGAGGAAGTAGAATATGTTGATGCCATCTTCGATTTGCTTAAGTATATTTATGCCTTCTCTCTTTCTGATTATTTACCATGCTTGAGGGGACTTGACTTGGATGGCCAGGAGAAGAAGGTGAAGGAAACTTTGAGGATCTTCAAGAAGTATCATGATCCCATCGTTCAAGAGAGAATTAAACAATGGAACGAAGGATTAAAGGTTGATGTAGAGGATTGGCTTGATGTTATGATCTCCCTCAAAGATGCCAACAATAACCCAACATTGACATTGGAGGAAATCAATGCACAAATTATAGAATTGATGATCGCAACAGTGGACAATCCATCAAATGCTTTTGAATGGGCACTTGCTGAAATGATAAACCAACCTGAGATGCTCCAACGAGCCGTTGAAGAATTGGACAGTGTGGTTGGGAAAGAGAGGTTGGTCCAAGAATCTGATATACCTAAGCTCAACTATGTGAAGGCTTGTGCAAGAGAAGCTTTTCGTCTTCATCCTATTGCACCTTTTATTCCTCCCCATGTTTCTATGAGTGACACAATGGTGGGCAATTATTTCATCCCTAAGGGTAGCCATGTAGTACTAAGCAGACAAGAGCTTGGGAGAAATCCAAAAGTGTGGAGTGAACCTCACATGTTCAAACCAGAACGTCACCTGAAGAGTGATGGGTCTGATGTAGTTTTGACTGAACCAAATTTGCAGTTAGTGTCATTCAGCACAGGAAGACGAGGTTGTCCTGGAGTGATGCTTGGGACCACAATGACTATGATGCTATTTGCTAGGTTGATCCATGGCTTCACTTGGAGTGCACCACCCAATGTATCAACAATCAACCTTGCTGAATCCAAGGATGATACCCTTCTTGCTGACCCACTTGTGGCAGTTGCTAAGCCAAGATTAGCACCAGAATTATACCAACGTTAA 1617 0.4187 MDQTPFLLLSNIQGFWPSLLVILTTFIVTVKALKAHFVENYSKKPKPKLPPGPKPWPIVGNLPEMLANRPTHKWIHKLMKEMNTEIACIRLGNAYVVPVTCPTIASEFLRRHDATFASRSLSVCTHLISAGYSSAIFAPFGDQWKKMKKIITNDLLSPHKHQWLHGKRTEEADNLMFYVYNKCKSVNDDGVSGLVNIRNATRHYCSNLIRKIIFNTRYFGKGRMDGGPGLEEVEYVDAIFDLLKYIYAFSLSDYLPCLRGLDLDGQEKKVKETLRIFKKYHDPIVQERIKQWNEGLKVDVEDWLDVMISLKDANNNPTLTLEEINAQIIELMIATVDNPSNAFEWALAEMINQPEMLQRAVEELDSVVGKERLVQESDIPKLNYVKACAREAFRLHPIAPFIPPHVSMSDTMVGNYFIPKGSHVVLSRQELGRNPKVWSEPHMFKPERHLKSDGSDVVLTEPNLQLVSFSTGRRGCPGVMLGTTMTMMLFARLIHGFTWSAPPNVSTINLAESKDDTLLADPLVAVAKPRLAPELYQR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00563 538 Pfam Cytochrome P450 50 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 SUPERFAMILY Cytochrome P450 50 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Cca01g00563 538 PANTHER P450 FAMILY PROTEIN, PUTATIVE-RELATED 17 536 - -
Cca01g00563 538 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 17 536 - -
Cca01g00563 538 Gene3D Cytochrome P450 37 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 427 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00563 538 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00563 Cca-Chr1 7129899 7132449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00563 8 536 Cytochrome P450 AT4G39950 53.585 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00563 - K14984 gmx:100809902 919.457