Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00561 ATGGGTTATGCCCTCTATTTTTCATGGTTGCACCTTAAATTATTTCTAATTTATTTGCTTATTATGATTTTTGGCTTCACCATTATCAAAGTCTTGGGATATCATTTAGTTAAGAAGTTCAAATTGCCCCCAGGTCCCAAACCATGGCTTCTAGTTGGTAACCTTCCCGAAATGCTTGTTAACAAGCCTGTATTTCGGTGGATACATAAACTTATGAAAGAAATGAACACTGAAATCGCTTGTATCCGCCTAGGAAATGTTAACATAATCCCAGTGACTTGTCCTACAATTGCTTGTGAATTTTTGAGAAAGCATGATGTTGATTTTGCATCTAGACCACTAACCATGGCCACTGGTATCATCTCTAGTGGTTATGTGACAATAGCTATTGTACCCTTTGGGGAACAATGGAAGAAAATGAGGAGAATCTTTGTCAATGACTTGTTCTCCCCACTTAGGCATCAATGGCTTCAAGACAAAAGAAATGAAGAAGCCGATAACATTATGTTTTATGTTTACCACAAATGCAAAAATCCGAGTGATGATGCTCTTGTGAATGTTAGAAATGTTGCACAACATTATTGTTGTAATGTAGCTAGGAAATTGATTTTTAATACAAGGTACTTTGGAAAGGGTAGGGAGGATGGAGGGCCTGGTTTAGAGGAAGAAGAACATGTGAATATTATTTTCGTGTTGCTTAAACATGTTTATGCCTTTTCAGTTTCTGATTATATCCCTTGGTTAGGGATGCTTGATTTAGATGGCCATAAGAGAAAGGTAAAGAATGGTTTGAAGATGATGAAGAAGTATCATGATCCAATCGTTGAAGAGAGAATCAAACAATGGAAAGATGGCTCAAAGACCATTGAAGAGGACTTGCTGGATGTTCTGATCTCATTGAAAGATGTCAATAATAATCCAACATTGACATCAAAGGAAATCAAGGCTCTAACAATAGAACTCATGCTTGGAGGAGCAGACAATCCATCAAATGCAGTGGAATGTGCACTTGCGGAAATGGCAAATCATCCAGAAATGCTTCAAAGAGCCACTGAAGAAGTGGATAATGTTGTTGGTAAGGAAAAACTGGTACAAGAGTCAGATGTTCCTAATCTGAATTATGTGAAGGCTTGTGTAAGAGAAGCTTTTCGCCTTCATCCTGTTGTGCCTTTTAATCCTCCCCATGTCTCAGTCAATGACACAATGGTTGGCAATTATTTTATCCCAAAGGGTAGCCATGTACTATTGAGCAGACAAGGGCTTGGCCGAAACCCAAAAGTGTGGTATGAGCCTCATGAGTTCAAGCCAGAACGCCACCTAAAGAATGATGAACCTTTGATCGCTTTGTCAGAACCAGATCTAAAGTTAATATCATTTGGCACTGGAAGAAGAGGTTGTCCTGCGGTCATACTTGGCACAACAATGACCGTCATGCTATTAGCTAGGTTGCTCCATGCCTTCACTTGGTCTGCACCTCCAAATGTATCAACCATCAACCTTGCCAAGTCTGAAAATGGTGTTTTGCTTAAGGAGCCACTTGTGTTAGTAGCAAAGCCAAGATTAGCAGCAGCGTTGTACAAGTAA 1584 0.3946 MGYALYFSWLHLKLFLIYLLIMIFGFTIIKVLGYHLVKKFKLPPGPKPWLLVGNLPEMLVNKPVFRWIHKLMKEMNTEIACIRLGNVNIIPVTCPTIACEFLRKHDVDFASRPLTMATGIISSGYVTIAIVPFGEQWKKMRRIFVNDLFSPLRHQWLQDKRNEEADNIMFYVYHKCKNPSDDALVNVRNVAQHYCCNVARKLIFNTRYFGKGREDGGPGLEEEEHVNIIFVLLKHVYAFSVSDYIPWLGMLDLDGHKRKVKNGLKMMKKYHDPIVEERIKQWKDGSKTIEEDLLDVLISLKDVNNNPTLTSKEIKALTIELMLGGADNPSNAVECALAEMANHPEMLQRATEEVDNVVGKEKLVQESDVPNLNYVKACVREAFRLHPVVPFNPPHVSVNDTMVGNYFIPKGSHVLLSRQGLGRNPKVWYEPHEFKPERHLKNDEPLIALSEPDLKLISFGTGRRGCPAVILGTTMTVMLLARLLHAFTWSAPPNVSTINLAKSENGVLLKEPLVLVAKPRLAAALYK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00561 527 SUPERFAMILY Cytochrome P450 43 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Cca01g00561 527 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 14 525 - -
Cca01g00561 527 PANTHER P450 FAMILY PROTEIN, PUTATIVE-RELATED 14 525 - -
Cca01g00561 527 Pfam Cytochrome P450 43 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g00561 527 Gene3D Cytochrome P450 37 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00561 Cca-Chr1 7102467 7106107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00561 37 526 Cytochrome P450 AT5G05260 54.858 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00561 - K14984 gmx:100787378 889.026