Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00555 ATGGGTTCCGACATTTGCGTTGTGAATGGTTCGTGCACTCATGAATGGAGGAAGGGGTGGACTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACACCCTTGACCCATTATCTTCCCAGGACAATTCAGTTTTCTGTAATAAATTCCACCGCCAACAAAATGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGATGCGTAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGCTGTGTTAGCTGTGTAAATACTACCCAACTTAGTATGATGAGGAATACTGAAAATCCAAATGGGTCAGTTTCATCGATAAAAAGTAATGCAAGTGATCGACATTCTGCCCATTTTGATGGAAGACTGTTTGCGGGTAGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTGTTGAAGCCAGTGAATCCAGCCGTTGGAATCATGGTCAAAGAGATGGCATAATTCCACGGTGTGGGCAAAACAACCAAGAAGCTAAGTGTTCCTTCAGGGAAGGGGATGTTGGATTTTCAAATGTGATGAAACCATCTGTTCAGTCATTAACATTTGCCACATTAGAAAATAATAGGTCAACCTGGGAGATTAAAAACATGCATGAATCAAATTCACAGCCATCGTTGAGTATGTATCTGGGAAATGCATCAGGGAGCAACTCTGTCCCGCCTTCTGTTGGAGAGGCTTTAGAAGGAAGACTTGATGGTAAAACATCTCCTCCCTTTCATCAAGGGCAAAGATCTCGCCCTATATTCCCCAAACCGTTAAAGAGTGGGCTTACCATAAGTGTGGAAACAGATAAAGGTAGAATTTCTCAATCACGCGTTGCTCGGCCGCCTGCTGATGGAAGGGGGAAGAATCAGTTACTTCCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGCGATTGGCTGGGGATTTGAAATCCACTGTAGTGCCATTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCTTGTGCTGAGGCATATTTTCCTCATATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGACTGGAAATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTTTTGGAGGGCGTGACCCCTTGCATACAGTCCATGCAGTTACGAGCTGGCGATACTGTAACATTTAGTCGGATAGATCCTGGAGGCAAACTTGTTATGGGCTTCAGAAAGGCATCAAATTCTACGGATACACAGGATGCCTCCACATCTGCACCATCTAATTCAACCAAGGGAACTTCCTCTTCTGCTGGAACTGAGAATCTGCCATCGGGAAGTAATCATGCCGATCTTCTCCATTCAGTGACAGGGAATGTGGAACCTCACTTAGATGAGCATACAGAACATCTGCATTTGGGTACTGGAACTGCTGGGTTGCTTAAAACTGAAAATAATGAGATGACAAACAATAGTTTGGTGCAACAACAAATTTCAGTTTCAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTAATTGATAATGTAGATGCTATGGAGTTGAAACTTACATGGGAAGAAGCACAAGATTTGCTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAATATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCCATTGATGCTCTTCTTCCACCGAAGTGGACATGTTCTGAAAATGTTTGGGATTCAATCAGGTGTTCATGCTCTGCAGCAGAGGAACTAAGTTCAAGGGAATTGGAAAATCTTCTGAAAACCAACAAAGATTTTAAGAAGCGACGAGTTGTAGAAAGCAGCAAGTCAATCCAAGAACATGAGCCTTCTGGCTTGGACGCTCTTGCCAGTGCAGCAGTTCTAGGAGAAAATCTCGTCGACACTGCCGAATCATCAGCCAGAGCCACCACCAAACATCCTAGACACCGCCCTGGCTGCTCCTGCATCGTGTGCATTCAGCCCCCAAGCGGAAAGGGCAAACACGAGCAGACATGCACATGCAACGTGTGCACGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTAAGGAAGAAGAAACGGCAGTCTGAACACGAAGCAGATGCTGCTCAAAAGGAACAAGTTCTCCAGAAAGATGAGTCAGATACCAATGGAGCATCAAGAGATGATGCAAGCCTTTTGGAGAAAGCTGAAGTGGGTGAGTCCAGTGGTGGACAGATAGATCTGAATTCTCATCCCAACCGTGAAGACATGATGCAAGTGGATGTCACAGGACTTGACATGTCTACTCCTCTTGAAACAACAACAACAAACCATTCAGTAAGGGAATTTATGAACCAAAATGACCTAAGAAGCTTTGATAATGAAGTGCAGGGTGGCCAGAATTCTTCTTTGCACACTCAATCTAATGGAGAAGGTCAGAGATTCTTCTCTGATGGAAGATGCTTTTCATCCATTGTGTGGAACCAAGAAAGAGATGAGGTATACAGTCAATCCAATCAAAGTCAAAACAATCTTCCTTGA 2718 0.4441 MGSDICVVNGSCTHEWRKGWTLRSGGFAQLCCKCGFMEEWKGDTLDPLSSQDNSVFCNKFHRQQNGWRECNFCNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNTTQLSMMRNTENPNGSVSSIKSNASDRHSAHFDGRLFAGSVDEGKLMQFCKIVEASESSRWNHGQRDGIIPRCGQNNQEAKCSFREGDVGFSNVMKPSVQSLTFATLENNRSTWEIKNMHESNSQPSLSMYLGNASGSNSVPPSVGEALEGRLDGKTSPPFHQGQRSRPIFPKPLKSGLTISVETDKGRISQSRVARPPADGRGKNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRMQDVKGNDWKFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAPSNSTKGTSSSAGTENLPSGSNHADLLHSVTGNVEPHLDEHTEHLHLGTGTAGLLKTENNEMTNNSLVQQQISVSEKKRTRNIGPKSKRLLIDNVDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQIFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPIDALLPPKWTCSENVWDSIRCSCSAAEELSSRELENLLKTNKDFKKRRVVESSKSIQEHEPSGLDALASAAVLGENLVDTAESSARATTKHPRHRPGCSCIVCIQPPSGKGKHEQTCTCNVCTTVKRRFKTLMLRKKKRQSEHEADAAQKEQVLQKDESDTNGASRDDASLLEKAEVGESSGGQIDLNSHPNREDMMQVDVTGLDMSTPLETTTTNHSVREFMNQNDLRSFDNEVQGGQNSSLHTQSNGEGQRFFSDGRCFSSIVWNQERDEVYSQSNQSQNNLP 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00555 905 MobiDBLite consensus disorder prediction 851 871 - -
Cca01g00555 905 Gene3D - 604 659 - -
Cca01g00555 905 Gene3D - 317 444 IPR015300 -
Cca01g00555 905 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
Cca01g00555 905 Pfam CW-type Zinc Finger 606 648 IPR011124 GO:0008270
Cca01g00555 905 MobiDBLite consensus disorder prediction 757 794 - -
Cca01g00555 905 SUPERFAMILY DNA-binding pseudobarrel domain 337 439 IPR015300 -
Cca01g00555 905 MobiDBLite consensus disorder prediction 438 479 - -
Cca01g00555 905 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 858 - -
Cca01g00555 905 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Cca01g00555 905 MobiDBLite consensus disorder prediction 289 311 - -
Cca01g00555 905 MobiDBLite consensus disorder prediction 754 814 - -
Cca01g00555 905 SMART B3_2 339 440 IPR003340 GO:0003677
Cca01g00555 905 CDD B3_DNA 337 438 IPR003340 GO:0003677
Cca01g00555 905 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Cca01g00555 905 MobiDBLite consensus disorder prediction 434 479 - -
Cca01g00555 905 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00555 Cca-Chr1 7044896 7052348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00555 1 821 B3 DNA Binding Superfamily AT2G30470 48.434 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca01g00555 B3 2.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00555 - - gmx:100789848 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00555 01 7044896 7052348 Cca01g00555 01 7044896 7052348 ECH