Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00550 ATGGCAGAGGCTAATGTAGTTCTGCTGGATTTCTGGCCAAGCTCTTATGGAATGAGAGTGAAAATCGCTTTGGCTGAGAAGGGTATCACATATGAGTGCAAGCAAGAAGATTTTCAAGCTAAAAGTTCTCTGCTTTTGGAAACGAACCCGGTTCACAAAATGATACCAGTTTTGATTCATAATGGAAAACCCATATGTGAATCACTGAATATTGTCCAGTACATTGATGAGGCATGGAACCACAAACCTTCTCTCCTTCCTTCTGATCTTTACAAACGATCCCAAGCCAGGTTTTGGGGCGATTACATTGACAAAAATGTATACAATAGTGTAAAGAGGGTATGGACAGGGAAGGGTAAAGAGCAAGAAGAGCACAATAAACAATTTATAGAATGCTTGAAGACCTTGGAAGATGAACTTGCAAACAAACCATATTTTGGTGGTGAAGACTTTGGGTATGTGGATGTGGCTCTTGTTCCCTTCACTAGCTGGTTTTACACAGTTGAGACATTTGGGAAACTAAGCATTGAGGAAGAATGTCCCAAACTTGTGGCTTGGGCCAAGAGGTGCATGCAAAAAGACAGTGTGGCCACGTCACTCCCTCACCCTCACAAGATCTATGCCTTTGCCCTGCAATATAAACAGAGACATGGACTTGAGTGA 663 0.4223 MAEANVVLLDFWPSSYGMRVKIALAEKGITYECKQEDFQAKSSLLLETNPVHKMIPVLIHNGKPICESLNIVQYIDEAWNHKPSLLPSDLYKRSQARFWGDYIDKNVYNSVKRVWTGKGKEQEEHNKQFIECLKTLEDELANKPYFGGEDFGYVDVALVPFTSWFYTVETFGKLSIEEECPKLVAWAKRCMQKDSVATSLPHPHKIYAFALQYKQRHGLE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00550 220 Pfam Glutathione S-transferase, C-terminal domain 123 189 - -
Cca01g00550 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
Cca01g00550 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Cca01g00550 220 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Cca01g00550 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 215 IPR045073 -
Cca01g00550 220 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 4 215 - -
Cca01g00550 220 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Cca01g00550 220 Gene3D - 89 220 - -
Cca01g00550 220 CDD GST_N_Tau 6 79 - -
Cca01g00550 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Cca01g00550 220 SFLD Main (cytGST) 2 217 - -
Cca01g00550 220 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Cca01g00550 220 CDD GST_C_Tau 91 213 IPR045074 GO:0004364|GO:0006749
Cca01g00550 220 Gene3D Glutaredoxin 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00550 Cca-Chr1 6941457 6943317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00550 7 217 Glutathione S-transferase Gene Family AT1G78370 57.820 1.41e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00550 K00799 - gmx:100527221 417.157