Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00549 ATGTCGTATGTGCCTCCGCACCTCAGAAAcgccagctccaccgccatcgccaccgccagaaccccctccgtagccctagacaacaacaacaccaccaacaaccaccaccaccacagccacaacaccaaGCTCGCATTCCCCTCCAACAATTGCTCCTCCCTCCACAATGCCTCTCGCCGGAccgccgccgccccgccgtcgccgcgcattctcgccgcccccgacaccgTCTTCCCGCAATGGCAACCCTCCGAACGCGTTTCCCGCATGACTCCGCAACAGATTGAAGAGGTCCGCTCCCGGCTTAATCTTGATGTTGCTGTTGCGACCGACTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGATATTGCTTACCACGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTAGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAATCTCCAATTCGGCGCAGTGGTCCCCTAGCATTAGTCTTGGCTCCTACAAGAGAACTCGCCCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCTGAACTTAGAGCTGGAGTTGAAATAGCAGTTGCCACCCCCGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAACATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCCAGCCCAGTGCAAGTGAAGGTTGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTCCTAGATTTACTTGTAGAGGAAGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTATTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTCCGGAATAGCTCCACCAACATTTTGGTTGCCACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTTTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTGGCGAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAGAAGGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTTCTTCAATTAACATTGAAGATAAGTATAAATTCATGATTACTGCCGCAAATGTTAAAAGGGAGGGTGCAGCAGATAGTGCCTGGGATGATTAA 1695 0.413 MSYVPPHLRNASSTAIATARTPSVALDNNNTTNNHHHHSHNTKLAFPSNNCSSLHNASRRTAAAPPSPRILAAPDTVFPQWQPSERVSRMTPQQIEEVRSRLNLDVAVATDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQSPIRRSGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRNSSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGASSINIEDKYKFMITAANVKREGAADSAWDD 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00549 564 SMART helicmild6 386 467 IPR001650 -
Cca01g00549 564 Coils Coil 508 528 - -
Cca01g00549 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 508 IPR001650 -
Cca01g00549 564 MobiDBLite consensus disorder prediction 1 70 - -
Cca01g00549 564 Gene3D - 80 330 IPR027417 -
Cca01g00549 564 Gene3D - 332 526 IPR027417 -
Cca01g00549 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 326 IPR014001 -
Cca01g00549 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 487 IPR027417 -
Cca01g00549 564 SMART ultradead3 139 341 IPR014001 -
Cca01g00549 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 24 529 - -
Cca01g00549 564 CDD DEADc 131 327 - -
Cca01g00549 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Cca01g00549 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Cca01g00549 564 CDD SF2_C_DEAD 338 476 - -
Cca01g00549 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 24 529 - -
Cca01g00549 564 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g00549 564 Coils Coil 205 225 - -
Cca01g00549 564 MobiDBLite consensus disorder prediction 43 60 - -
Cca01g00549 564 Pfam Helicase conserved C-terminal domain 350 467 IPR001650 -
Cca01g00549 564 Pfam DEAD/DEAH box helicase 144 313 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00549 Cca-Chr1 6913674 6921864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00549 120 489 Eukaryotic Initiation Factors Gene Family AT1G72730 35.310 2.01e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00549 K12823 - gmx:100818387 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00549 01 6913674 6921864 Cca01g00549 01 6913674 6921864 ECH