Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00547 ATGAGTGACAAACACCAACCTTTGAAGCTCCACCACCCCTTTTACCCACCAACCCCAAGCACCAATTTTGACGGCGACCCACCATGCAAAACCGCCGGAAAACCCCTTAAGCTCATCCGGGTCATCCTCACCGACCACGACGCCACCGACTCAGACTCCTCCGCCGACGACGAGGACCCAAAAGAACAGCGAAAAGTGAAGAGAAGAATCACCCACATCACTATAAACCTTCCCTTTTTATCACAAACCCCAACACCAACTTCAAAAACAAAACTTTCTTCTTTTTCTTCTCTTGACCCGACCCGTTTAGCTAGACCCGAGAAACGACCCGGTGGTCCTCGCCGCCGGAACAAGTTTCGCGGCGTCCGGCAGCGTCCGTGGGGACGGTGGACGGCCGAAATCCGCGACCCGACCCGCCGGAAACGGGAAGCCGCCGCGGTTTACGACGCCGCCGCCGTGAAGCTCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTCTCCGTCGCCGAGAAAAAATTTTCCGAGGCGGTGCCGCCGTTCTCCGGTGAGGGTTTTGCGTCGCCGACGTCCGTCCTCGCCTACTGCGACGACGAGTCCACGCCGCCGTTTGACGGCTTCCGTTACGGTGTTGTCGACGCGTTCGGGTTCGACATCGACGCGCCGTTTAGTTTGACGGACGTTAACTCCGGCGTGCTGAGTCAGCGGTCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGATGTGGCCGAGTTGA 762 0.5866 MSDKHQPLKLHHPFYPPTPSTNFDGDPPCKTAGKPLKLIRVILTDHDATDSDSSADDEDPKEQRKVKRRITHITINLPFLSQTPTPTSKTKLSSFSSLDPTRLARPEKRPGGPRRRNKFRGVRQRPWGRWTAEIRDPTRRKREAAAVYDAAAVKLKGPNAVTNFPLSVAEKKFSEAVPPFSGEGFASPTSVLAYCDDESTPPFDGFRYGVVDAFGFDIDAPFSLTDVNSGVLSQRSKEEFGEFDPDEFLMWPS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00547 253 ProSiteProfiles AP2/ERF domain profile. 118 165 IPR001471 GO:0003700|GO:0006355
Cca01g00547 253 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 36 250 - -
Cca01g00547 253 MobiDBLite consensus disorder prediction 45 66 - -
Cca01g00547 253 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g00547 253 MobiDBLite consensus disorder prediction 79 100 - -
Cca01g00547 253 SUPERFAMILY DNA-binding domain 118 167 IPR016177 GO:0003677
Cca01g00547 253 MobiDBLite consensus disorder prediction 79 121 - -
Cca01g00547 253 SMART rav1_2 118 171 IPR001471 GO:0003700|GO:0006355
Cca01g00547 253 CDD AP2 118 167 IPR001471 GO:0003700|GO:0006355
Cca01g00547 253 PIRSF PTI6 14 253 IPR017392 GO:0003700
Cca01g00547 253 Gene3D AP2/ERF domain 117 167 IPR036955 GO:0003700|GO:0006355
Cca01g00547 253 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00547 Cca-Chr1 6888826 6890689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00547 37 206 AP2-EREBP Transcription Factor Family AT4G27950 37.374 1.79e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00547 K13434 - gmx:100794593 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00547 01 6888826 6890689 Cca01g00547 01 6888826 6890689 ECH