Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00544 ATGAAGGCTGGTGAAGTTTACTCCAAATTCAATTGCCAATATCTCATTCCTTACAGAAAACAACTCTCCATGAAGTTTCAATCTACTTCAGTGACTTCTTTACTTTTTGTCATAGTAATCTTTTTTCCTTTGGCTATTGCTGATCTAAGTTCAGACAAGCAAGCCCTTCTTGATTTTGCTAATGCTGTCCCTCACCGGCGAAACCTCATGTGGAATCCATCCACCTCAGTATGCACCTCTTGGATAGGTATCACTTGCAATCAGAATGGAACTCGTGTTGTCACTGTTCGGCTCCCTGGAGTAGGACTAGTAGGTTCCATTCCATCCAATACACTTGGAAAGCTTGATGCTGTGAAGATCATTAGCCTTCGCTCCAATTTACTCACTGGAAATCTCCCTGCTGACATTGCTTCTCTTCCTTCTCTTCAGTATCTTTACCTCCAGCATAACAACCTTTCTGGTAACATACCTACCTCGTTGTCATCCCTACTCGTTGTACTCGATTTGTCGTATAATTCCTTCACTGGTGTTCTTCCGAAGACATTTCAGAATTTGTCACAGTTAACTAGTTTGAGTCTCCAGAACAACTCACTGTCTGGACAGATACCTGATCTCAATGTCACTCAGCTCAGGCTTTTGAACTTAAGCTACAATCACTTGAATGGCTCTATTCCTAAGGCTCTTCAGATTTTTCCTAACTCTTCCTTTGAAGGAAACTCTCTTTTATGTGGACCACCTCTAAGGCCATGCTCTGTGATACCTCCAGCTGTGACTCCACCTGCATCGCCATCTCCTGGAAGGCGAAGCTCGAGAAACAAGTTGAGTAAGATAGCTATCATTGCCATTGCTGTTGGAGGAGGAGTGGTGGTGTTCTTTGTTGCTCTTGTTATTGTTATTTGCTGTTTGAAGAAGGGGGATGATGAGAGAAGCTCCGATGTAAGTAAAGGGAAGGGTACGAGTGGTGGTAGGGGCGAGAAGCCGAGAGAAGAGTTTGGAAGTGGGGTTCAAGAGCCTGAGAAGAACAAGCTGGTTTTCTTTGAGGGGAGTTCTTATAATTTTGACCTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTTCTGGGAAAGGGTAGTTATGGTACTGCATACAAGGCCATACTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAGGAAGTTGTGGTAGGCAAGAAGGACTTTGAGCAGCAGATGGAGATCATGGGAAGAGTTGGACAACACTCAAATGTTGTGCCACTTCGTGCTTATTATTATTCAAAAGATGAAAAGCTTTTGGTATATGACTATCTCCCAAGTGGCAACCTACACACACTCTTGCATGGTGGTAGAACAGGTGGGAGAACTCCATTAGACTGGGACTCCAGAATCAAAATATCCCTTGGAACAGCCAAAGGACTAGCTCACATTCATTCTGTTGGTGGTCCAAAATTCACACATGGAAACATCAAGTCCTCAAATGTGCTCCTCAACCAAGATCATGATGGCTGCATTTCTGATTTTGGCCTTGCTCCCCTTATGAATGTTCCTGCTACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCGGAAGTGATTGAAACCCGAAAACACTCTCATAAATCTGATGTTTATAGCTTTGGTGTCCTCCTCCTTGAAATGCTTACAGGGAAGGCTCCTCTCCAATCTCCAGGACGTGATGACATGGTTGATCTCCCTAGATGGGTGCAGTCTGTTGTTAGGGAAGAGTGGACAGCTGAAGTTTTTGATGTGGAGCTCATGAGGTACCAAAACATTGAGGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGATGCCAGATATGAGACCTAGCATGGATGATGTAGTGAGGATGATTGAAGAGATTCGGCTATCTGACTCAGAGAACCGGCCTTCTTCTGAAGAAAACAAGTCTAAGGACTCAAATGTTCAGACTCCATAG 1968 0.4416 MKAGEVYSKFNCQYLIPYRKQLSMKFQSTSVTSLLFVIVIFFPLAIADLSSDKQALLDFANAVPHRRNLMWNPSTSVCTSWIGITCNQNGTRVVTVRLPGVGLVGSIPSNTLGKLDAVKIISLRSNLLTGNLPADIASLPSLQYLYLQHNNLSGNIPTSLSSLLVVLDLSYNSFTGVLPKTFQNLSQLTSLSLQNNSLSGQIPDLNVTQLRLLNLSYNHLNGSIPKALQIFPNSSFEGNSLLCGPPLRPCSVIPPAVTPPASPSPGRRSSRNKLSKIAIIAIAVGGGVVVFFVALVIVICCLKKGDDERSSDVSKGKGTSGGRGEKPREEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHSNVVPLRAYYYSKDEKLLVYDYLPSGNLHTLLHGGRTGGRTPLDWDSRIKISLGTAKGLAHIHSVGGPKFTHGNIKSSNVLLNQDHDGCISDFGLAPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPSMDDVVRMIEEIRLSDSENRPSSEENKSKDSNVQTP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00544 655 SMART LRR_typ_2 207 238 IPR003591 -
Cca01g00544 655 SMART LRR_typ_2 139 159 IPR003591 -
Cca01g00544 655 SMART LRR_typ_2 160 184 IPR003591 -
Cca01g00544 655 SUPERFAMILY L domain-like 51 250 - -
Cca01g00544 655 ProSitePatterns Protein kinases ATP-binding region signature. 366 397 IPR017441 GO:0005524
Cca01g00544 655 Gene3D Ribonuclease Inhibitor 49 205 IPR032675 -
Cca01g00544 655 CDD STKc_IRAK 366 631 - -
Cca01g00544 655 MobiDBLite consensus disorder prediction 307 335 - -
Cca01g00544 655 SUPERFAMILY Protein kinase-like (PK-like) 364 638 IPR011009 -
Cca01g00544 655 ProSiteProfiles Protein kinase domain profile. 360 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00544 655 Gene3D Phosphorylase Kinase; domain 1 329 435 - -
Cca01g00544 655 ProSiteProfiles Leucine-rich repeat profile. 141 164 IPR001611 GO:0005515
Cca01g00544 655 PANTHER OS05G0588300 PROTEIN 16 655 - -
Cca01g00544 655 MobiDBLite consensus disorder prediction 632 646 - -
Cca01g00544 655 Pfam Leucine rich repeat N-terminal domain 50 87 IPR013210 -
Cca01g00544 655 PANTHER LRR RECEPTOR-LIKE KINASE 16 655 - -
Cca01g00544 655 Gene3D Ribonuclease Inhibitor 206 251 IPR032675 -
Cca01g00544 655 Pfam Protein kinase domain 363 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00544 655 Gene3D Transferase(Phosphotransferase) domain 1 436 654 - -
Cca01g00544 655 MobiDBLite consensus disorder prediction 632 655 - -
Cca01g00544 655 Pfam Leucine rich repeat 164 198 IPR001611 GO:0005515
Cca01g00544 655 Pfam Leucine rich repeat 106 152 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00544 Cca-Chr1 6848254 6852842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00544 9 653 Receptor kinase-like Gene Family AT5G58300 66.006 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca01g00544 Pkinase 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00544 - - gmx:100796171 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00544 01 6848254 6852842 Cca01g00544 01 6848254 6852842 ECH
Cca01g00544 01 6848254 6852842 Cca05g01364 05 31815316 31817553 PCT