Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00541 ATGTATCTTTCAAAGAGTTTCAAGCATGAAATTGTTTTCTTCTTGTGGTTCTGCTTCTGTTTGCTACATGCTGCTGGGCAGAATAACATCACTGCTCCCGATGAAGTTGAAGCATTGAAAGCCATTAAGAGAAGTTTGATTGATACTAATGGAAATTTGAGCAATTGGAATAGAGGAGACCCATGCACATCAAGGTGGAAAGGAGTTTTGTGCTACAATGAAACACAAGATGATGGCTATCTACATGTTGAAGAATTGCAATTGCTGAGACTGAACTTGTTCGGAACTTTGGCACCAGAGATTGGCAGATTAACTTATATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGGAGTATTCCGAAGCAAGTTGGCAATATCACACGTTTGGAACTCTTGCTCCTGAATGGAAATAATTTAACAGGTTCACTACCAGAGGAGATTGGCTATCTTCCAAACCTGAATAGAATACAAATTGATCAGAACCAAATATCAGGCCCTATACCTAAGTCATTTGCAAACCTGAACATGACAAAGCATTTTCACATGAACAATAATTCACTTAGCGGGCAAATTCCACCGGAGCTTTCCCGATTACCAAACCTGGTTCACCTTCTTCTCGACAATAACAACTTATCAGGATATCTTCCCCCTGAGCTGTACAAAATGCCAAACTTACTTATCATTCAACTTGATAACAATAACTTTGAAGCAAATAGCATTCCTGATACATATGCGAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGCTTGCGAGGACCCGTTCCTGATTTAAGCAGGATACCTCACCTTCTTTATCTTGACCTCAGTTTCAACCAGTTGAATGAATCGATTCCTCCCAATAGGCTGTCTGAAAATATCACAACCATTGATTTATCAAACAACCAACTTACTGGAAATATTCCATCCTACTTTGCAGATCTTCCACGTCTTCAGAAATTGTCACTTGCAAACAATTCATTGGATGGCAGTGTTTCTTCCTCCATTTGGCAGAATAAGACTTTAAATGGAACAGAAAAATTTCTCTTGGAGTTGGAAAATAATAATCTTACAACCATATCAGGCAGTATCAATCTTCCTTCAAATGTCACAGTTGGGCTTGATGGAAATCCCCTTTGCTCAAATATAACCCTGAATCAGTTCTGTGGATCTGAAGGAGCTACTGAAACAAATGGCTCGTTCACAAATTCCAGTCCTTGTCCCACTCAAGCATGCCCTCCTCCTTATGAATACTCTGTGAATTGTTTCTGTGCGATTCCATTAATCGTTGACTATCGGCTGAAAAGTCCTGGATTTTCAAATTTTCTTCCATATTTGAATGAGTTTAAGGACTACATGACTACTGGAGTTAAAATATCTACCAATCAGCTAGAATATAAATTTTATTGGCAACCAGGACCTCGACTAACAATGGAGTTGAAGTTTTTTCCTGTATATGTTGATAACACTAGTGATCATATTTTCAATAGAAGTGAGCTGCAACGGATCACAACCATGTTTACAGGATGGCTAATTCCAGACAATGATACGTTTGGGCCTTATGAACTGATTGGGTTCGATCTTTTGGGTCCTTACCAGGATGAGATTGGCAAGAGTTCAAAATCAGGGATAAGTACGGGTGCATTGGTTGGCATAGTCATAGGGGCAATTGCCTGTGCAGTGACATTATCTGCAATTGTTACCATTCTTATATTGAGAGTAAAATTGAAAGATTATCATAGCATTTCCAAGAGACGTCATGCATCAAAGATCTCAATAAAAATTGATGGTGTAAGAGCCTTTACTTATGGAGAGTTGTCCtctgctacaaacaatttctctgctcaagttggacaagggggctatgggaaagtttataaaggtattctttctgatggcacagtcgttgccataaaacgtgcacaagagggatccctgcaaggtgagaaggagttccttaccgaaatatcattactgtcaaggttacatcatcgcaaccttgtgtctctgattggatactgtgatgaAGAAGGTGAACAGATGCTAGTATATGAATTTATGCCGAATCGCACATTGAGGGATCACCTTTCTGTTACAGCCAAAGaacctctgacttttgccatgagattgaagattgcgctaggggcagctaaaggtcttatgtatctacacacagaagctgatcctccaatatttcaccgagatgtaaaggccagcaacatcttattggactctaagtttgccgccaaagtggctgattttggactttcaCGGCTTGCTCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTGACTCACAAGTTAACTGACAAGAGTGATGTTTATAGTCTTGGCGTGGTATTTCTGGAACTTTTGACTGGGATGCAACCTATCTCACATGGCAAAAATATTGTTAGAGAGGTCAACGTTGCATATCAATCTGGCGTGATATTTTCAATCATCGATGGACGTATGGGGTCTTATCCATCTGAGCATGTGGAGAAGTTTTTGACTCTGGCCATGAAGTGTTGTGAAGATGAGCCGGAGGCACGGCCTAGAATGGCAGAAGTGGTCAGAGAGCTTGAAAACATATGGTCTACTATGCCGGAATCAGATACCAAGAGAGCTGAATTTGTATCCAGTGATTCTGGCAAAACAGACAGTAACAGCACACCATCTTCATCATCTGCTATGAAGACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2841 0.3485 MYLSKSFKHEIVFFLWFCFCLLHAAGQNNITAPDEVEALKAIKRSLIDTNGNLSNWNRGDPCTSRWKGVLCYNETQDDGYLHVEELQLLRLNLFGTLAPEIGRLTYMKRLNFMWNNISGSIPKQVGNITRLELLLLNGNNLTGSLPEEIGYLPNLNRIQIDQNQISGPIPKSFANLNMTKHFHMNNNSLSGQIPPELSRLPNLVHLLLDNNNLSGYLPPELYKMPNLLIIQLDNNNFEANSIPDTYANMSKLLKMSLRNCSLRGPVPDLSRIPHLLYLDLSFNQLNESIPPNRLSENITTIDLSNNQLTGNIPSYFADLPRLQKLSLANNSLDGSVSSSIWQNKTLNGTEKFLLELENNNLTTISGSINLPSNVTVGLDGNPLCSNITLNQFCGSEGATETNGSFTNSSPCPTQACPPPYEYSVNCFCAIPLIVDYRLKSPGFSNFLPYLNEFKDYMTTGVKISTNQLEYKFYWQPGPRLTMELKFFPVYVDNTSDHIFNRSELQRITTMFTGWLIPDNDTFGPYELIGFDLLGPYQDEIGKSSKSGISTGALVGIVIGAIACAVTLSAIVTILILRVKLKDYHSISKRRHASKISIKIDGVRAFTYGELSSATNNFSAQVGQGGYGKVYKGILSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNRTLRDHLSVTAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFAAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLTLAMKCCEDEPEARPRMAEVVRELENIWSTMPESDTKRAEFVSSDSGKTDSNSTPSSSSAMKTPFVSGDVSGSDLVSGVIPSIKPR 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00541 946 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 920 - -
Cca01g00541 946 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Cca01g00541 946 Gene3D Transferase(Phosphotransferase) domain 1 691 909 - -
Cca01g00541 946 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cca01g00541 946 MobiDBLite consensus disorder prediction 895 946 - -
Cca01g00541 946 SMART serkin_6 615 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00541 946 ProSiteProfiles Protein kinase domain profile. 615 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00541 946 Gene3D Ribonuclease Inhibitor 297 397 IPR032675 -
Cca01g00541 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Cca01g00541 946 Gene3D Ribonuclease Inhibitor 30 296 IPR032675 -
Cca01g00541 946 CDD STKc_IRAK 621 887 - -
Cca01g00541 946 SUPERFAMILY L domain-like 48 393 - -
Cca01g00541 946 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 920 - -
Cca01g00541 946 Gene3D Phosphorylase Kinase; domain 1 587 690 - -
Cca01g00541 946 SUPERFAMILY Protein kinase-like (PK-like) 602 905 IPR011009 -
Cca01g00541 946 Pfam Protein kinase domain 619 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00541 946 SMART LRR_typ_2 319 343 IPR003591 -
Cca01g00541 946 SMART LRR_typ_2 200 224 IPR003591 -
Cca01g00541 946 SMART LRR_typ_2 128 152 IPR003591 -
Cca01g00541 946 SMART LRR_typ_2 272 297 IPR003591 -
Cca01g00541 946 MobiDBLite consensus disorder prediction 905 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00541 Cca-Chr1 6787895 6799842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00541 18 897 Receptor kinase-like Gene Family AT5G01950 57.989 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca01g00541 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00541 - - gmx:100786467 1639.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00541 01 6787895 6799842 Cca01g00541 01 6787895 6799842 ECH
Cca01g00541 01 6787895 6799842 Cca05g01367 05 31880919 31896756 PCT