Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00540 ATGACGCACGCTCACACGCACACAGGCCCAAACCGCGGGCATCCGAAGGGTATAAAACGAGCACCATCTACTTCCCCCCTCTCCATTTTCAAAGGTTCTATTTCATCGAAAACCAACACCACCATGGGAAGAAGACCAGCGAGGTGTTACCGGCAGATAAAGAACAAACCGTACCCGAAATCGCGCTTCTGCCGCGGCGTACCCGACCCGAAGATCCGAATCTACGACGTGGGGACGAAGAAGAAGAGCGCGGAGGAGTTCCCTCTGTGCGTGCACCTGGTGTCGTGGGAGAAGGAGAACGTGTCGAGCGAGGCGCTGGAGGCGGCGCGCATCGCGTGCAACAAGTACATGGCGAAGATGGCGGGGAAGGACGCGTTCCACCTGCGCGTGAGGGTGCACCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCCGGCGCCGACAGGCTCCAGACGGGGATGAGGGGCGCCTTCGGGAAGCCGCAGGGGACGTGTGCGAGAGTCGGGATTGGTCAGGTGCTGCTCTCCCTACGGTGTAGGGATGCCAACGGTCACCACGCTCGCGAGGCGCTTCGCCGCGCTAAGTTCAAGTTCCCCGGCCGCCAGAAGATCATTGTTAGCAGAAAATGGGGATTTACTAAGTTCAGTCGAAGTGAGTATTTAAAGTTAAAGTCTGAGAACAGAATTGTGCCGGATGGGGTCAATGTCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGAGCCTGGAAGAGCTTTCTTGCCAGCTACAGCTTAG 786 0.5751 MTHAHTHTGPNRGHPKGIKRAPSTSPLSIFKGSISSKTNTTMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGTKKKSAEEFPLCVHLVSWEKENVSSEALEAARIACNKYMAKMAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVGIGQVLLSLRCRDANGHHAREALRRAKFKFPGRQKIIVSRKWGFTKFSRSEYLKLKSENRIVPDGVNVKVLGCHGPLANREPGRAFLPATA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00540 261 PANTHER 60S RIBOSOMAL PROTEIN L10 42 260 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca01g00540 261 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 42 260 - -
Cca01g00540 261 MobiDBLite consensus disorder prediction 1 46 - -
Cca01g00540 261 SUPERFAMILY Ribosomal protein L16p/L10e 45 214 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca01g00540 261 Gene3D Ribosomal protein L10e/L16 42 256 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca01g00540 261 TIGRFAM uL16_euk_arch: ribosomal protein uL16 42 215 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca01g00540 261 MobiDBLite consensus disorder prediction 26 45 - -
Cca01g00540 261 ProSitePatterns Ribosomal protein L10e signature. 149 170 IPR018255 GO:0003735|GO:0005840|GO:0006412
Cca01g00540 261 CDD Ribosomal_L16_L10e 82 207 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca01g00540 261 Pfam Ribosomal protein L16p/L10e 53 207 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00540 Cca-Chr1 6784746 6786843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00540 42 261 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 83.636 7.29e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00540 K02866 - gmx:100779884 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00540 01 6784746 6786843 Cca01g00540 01 6784746 6786843 ECH