Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00524 ATGCACTCTATTTCCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAGGGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTGGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAATAAGACTGGGATAGTTGTGAGCCCTCTGATATCGTTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAGAGCTGAATATCTTGGAAGCGCTCAGAAGGATTCCACTGTGCACTCTAAAGCTGAACGTGGTCAGTTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCTCAGTTTCTACTAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGACGAAGCCCATTGTATATCGGAATGGGGACATGATTTTAGGGTGGAGTACAAGCATCTAGACAAGTTACGTGGGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATTTGACATCACCAGTTCTCTTAAGATGAAGAATCCTTATATTATGGTTGGTTCATTTGACCGCCCAAATCTTTTCTATGGTGTCAAACTACTTAACCGTGGACAATCTTTTATTGATGAGCTTGTGCAAGAAATTTCAAAAGAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTGGAGCAGATATTCAGGTCATTTTCCGAAGCAGGCATTGAAGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAATCATGGTGGCTACCGTTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTCTATTACACAAGAAGTGACTTTGCAAAGGGAGACTTTTATTGTGGAGATTTAAAATCAGAAAACCAAAGAAAAGCTGTTATGGAGTCATTGCTGGCTGCCGAACGCTATTGTGTGCAGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAAGTTTCAGCTGACAGATGCGGGAACTGCGATAATTGCAAAGTCACAAAGAAAGAGCGTGACATGTCAAAAGAAGCGTTTCTTCTAATGGCTTGCATTCATTCATGCAGGGGCCATTGGGGCCTTAATATGCCCATTGATGTTTTGCGAGGGTCACGAGCCAAGAAAATTCTTCAAGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTTTCAAGGTTATTTGAAGGAGATTGTTAGTGACACGTACAGAACTATAAGTGTTAGCTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTTCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCTGAATCAGAGAGATTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTGAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAGGAAAATTGCTTTGGCAAGACCGTCCACTAAAGCCAGATTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACGAGATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGATTAAACCTATCATTGGATGGGAAAGCAACTTCGCAAACTATTGAAGGAAGGAAAGTATCTCCAATAACCAAAAAAACCAAGTTGACATCAGTAAAGTTGATATCAACAGAGTTGACATCGACAAAGTTGACATCATCAAGATTGACACCAGCAAAGTTAGAAGCATGGAAAATGTGGCATGAAGATGGTCGTTCTATTCAGGAGATTGCTAACTCTCCAGGTAGATCAGCTCCTATAAAAGAACAAACTGTTGCTGATTATCTGCTGGAAGCTGCTCAAGAAGGATTAGCTTTTGATTGGGTTAGATTCAGCGAGATGATAGGACTGACAGTAGAGATCATATCAGAAATTCAAAGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGAATAACCCTCGAAGCAGTTCAATCTGAAAATCAGCAGACTGGGGAAGATGATGAACCTGCACATAATGCTTCAAATTTGTCAGATCCTACTTTAAATACGTGCCACGTGGAAAGCCATTGTGAAGACAACATTTCTGCCAAAAGTTCAACAGAAAAAGGCGACTTAGAAATCAATGAGGTACCTACTCTATCTGTCAATGGTTCTGAGGTACAGAAGCTTCCATTAGCCAATGAGAGGGAATTCCCAAACAAACGACAAAAAGTCGGTGAAACAAAGGAAGCGAATTCAACTAAATTAAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTAATGAAGGGGCTACATTGAGCGATGTTTTGGAGCACTTTAATGGATCCAGTGAAGATTCCGTGATTGAACTGCTAAATTGCCTTGAGTGTGACTTTTCAATATATAGGAAAGGCAACATGTATAGGGTTATGTAA 2799 0.4037 MHSISSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVNKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDSTVHSKAERGQFDILFMTPEKACSVSTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLRGVLLDVPFVGLTATATEKVRFDITSSLKMKNPYIMVGSFDRPNLFYGVKLLNRGQSFIDELVQEISKEVASGGSTIIYCTTIKDVEQIFRSFSEAGIEAGMYHGQMNGKAREESHRLFVRDELQIMVATVAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKSENQRKAVMESLLAAERYCVQTTCRRKFLLEYFGEKVSADRCGNCDNCKVTKKERDMSKEAFLLMACIHSCRGHWGLNMPIDVLRGSRAKKILQVQFDKLPLHGLGKNYPANWWKALGHQLIFQGYLKEIVSDTYRTISVSSKGEQFLASSRPDYQPPLVLTLTSEMLGEEDNGNTQEEFKTLSTSESERFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIRKIALARPSTKARLANIDGVNQHLVTRYGDHFLQVIQKLSQGLNLSLDGKATSQTIEGRKVSPITKKTKLTSVKLISTELTSTKLTSSRLTPAKLEAWKMWHEDGRSIQEIANSPGRSAPIKEQTVADYLLEAAQEGLAFDWVRFSEMIGLTVEIISEIQSAISKVGSTDKLKPIKNELPEEITYQHIKTYLSMRNCGITLEAVQSENQQTGEDDEPAHNASNLSDPTLNTCHVESHCEDNISAKSSTEKGDLEINEVPTLSVNGSEVQKLPLANEREFPNKRQKVGETKEANSTKLKATESSVVEWLKNLNEGATLSDVLEHFNGSSEDSVIELLNCLECDFSIYRKGNMYRVM 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00524 932 MobiDBLite consensus disorder prediction 784 805 - -
Cca01g00524 932 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Cca01g00524 932 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 759 - -
Cca01g00524 932 SMART ultradead3 13 208 IPR014001 -
Cca01g00524 932 Pfam RQC domain 403 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Cca01g00524 932 Pfam RecQ zinc-binding 351 400 IPR032284 -
Cca01g00524 932 Pfam HRDC domain 548 613 IPR002121 GO:0003676
Cca01g00524 932 Gene3D - 1 198 IPR027417 -
Cca01g00524 932 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
Cca01g00524 932 Gene3D - 200 401 IPR027417 -
Cca01g00524 932 SUPERFAMILY HRDC-like 541 618 IPR010997 GO:0000166|GO:0044237
Cca01g00524 932 Pfam Helicase conserved C-terminal domain 218 325 IPR001650 -
Cca01g00524 932 Gene3D HRDC domain 538 619 IPR044876 -
Cca01g00524 932 Gene3D - 402 525 IPR036388 -
Cca01g00524 932 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Cca01g00524 932 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 5 759 - -
Cca01g00524 932 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Cca01g00524 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Cca01g00524 932 Pfam Helix-turn-helix domain 672 769 IPR029491 -
Cca01g00524 932 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 458 IPR004589 GO:0004386|GO:0006310
Cca01g00524 932 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Cca01g00524 932 SMART hrdc7 543 623 IPR002121 GO:0003676
Cca01g00524 932 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Cca01g00524 932 CDD DEXHc_RecQ 6 199 - -
Cca01g00524 932 CDD SF2_C_RecQ 200 335 - -
Cca01g00524 932 SMART helicmild6 245 326 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00524 Cca-Chr1 6500476 6511988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00524 235 342 Eukaryotic Initiation Factors Gene Family AT3G19760 26.852 4.20e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00524 K03654 - gmx:100797777 1604.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00524 01 6500476 6511988 Cca01g00524 01 6500476 6511988 ECH