Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00524 | ATGCACTCTATTTCCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAGGGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTGGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAATAAGACTGGGATAGTTGTGAGCCCTCTGATATCGTTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAGAGCTGAATATCTTGGAAGCGCTCAGAAGGATTCCACTGTGCACTCTAAAGCTGAACGTGGTCAGTTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCTCAGTTTCTACTAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGACGAAGCCCATTGTATATCGGAATGGGGACATGATTTTAGGGTGGAGTACAAGCATCTAGACAAGTTACGTGGGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATTTGACATCACCAGTTCTCTTAAGATGAAGAATCCTTATATTATGGTTGGTTCATTTGACCGCCCAAATCTTTTCTATGGTGTCAAACTACTTAACCGTGGACAATCTTTTATTGATGAGCTTGTGCAAGAAATTTCAAAAGAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTGGAGCAGATATTCAGGTCATTTTCCGAAGCAGGCATTGAAGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAATCATGGTGGCTACCGTTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTCTATTACACAAGAAGTGACTTTGCAAAGGGAGACTTTTATTGTGGAGATTTAAAATCAGAAAACCAAAGAAAAGCTGTTATGGAGTCATTGCTGGCTGCCGAACGCTATTGTGTGCAGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAAGTTTCAGCTGACAGATGCGGGAACTGCGATAATTGCAAAGTCACAAAGAAAGAGCGTGACATGTCAAAAGAAGCGTTTCTTCTAATGGCTTGCATTCATTCATGCAGGGGCCATTGGGGCCTTAATATGCCCATTGATGTTTTGCGAGGGTCACGAGCCAAGAAAATTCTTCAAGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTTTCAAGGTTATTTGAAGGAGATTGTTAGTGACACGTACAGAACTATAAGTGTTAGCTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTTCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCTGAATCAGAGAGATTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTGAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAGGAAAATTGCTTTGGCAAGACCGTCCACTAAAGCCAGATTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACGAGATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGATTAAACCTATCATTGGATGGGAAAGCAACTTCGCAAACTATTGAAGGAAGGAAAGTATCTCCAATAACCAAAAAAACCAAGTTGACATCAGTAAAGTTGATATCAACAGAGTTGACATCGACAAAGTTGACATCATCAAGATTGACACCAGCAAAGTTAGAAGCATGGAAAATGTGGCATGAAGATGGTCGTTCTATTCAGGAGATTGCTAACTCTCCAGGTAGATCAGCTCCTATAAAAGAACAAACTGTTGCTGATTATCTGCTGGAAGCTGCTCAAGAAGGATTAGCTTTTGATTGGGTTAGATTCAGCGAGATGATAGGACTGACAGTAGAGATCATATCAGAAATTCAAAGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGAATAACCCTCGAAGCAGTTCAATCTGAAAATCAGCAGACTGGGGAAGATGATGAACCTGCACATAATGCTTCAAATTTGTCAGATCCTACTTTAAATACGTGCCACGTGGAAAGCCATTGTGAAGACAACATTTCTGCCAAAAGTTCAACAGAAAAAGGCGACTTAGAAATCAATGAGGTACCTACTCTATCTGTCAATGGTTCTGAGGTACAGAAGCTTCCATTAGCCAATGAGAGGGAATTCCCAAACAAACGACAAAAAGTCGGTGAAACAAAGGAAGCGAATTCAACTAAATTAAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTAATGAAGGGGCTACATTGAGCGATGTTTTGGAGCACTTTAATGGATCCAGTGAAGATTCCGTGATTGAACTGCTAAATTGCCTTGAGTGTGACTTTTCAATATATAGGAAAGGCAACATGTATAGGGTTATGTAA | 2799 | 0.4037 | MHSISSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVNKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDSTVHSKAERGQFDILFMTPEKACSVSTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLRGVLLDVPFVGLTATATEKVRFDITSSLKMKNPYIMVGSFDRPNLFYGVKLLNRGQSFIDELVQEISKEVASGGSTIIYCTTIKDVEQIFRSFSEAGIEAGMYHGQMNGKAREESHRLFVRDELQIMVATVAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKSENQRKAVMESLLAAERYCVQTTCRRKFLLEYFGEKVSADRCGNCDNCKVTKKERDMSKEAFLLMACIHSCRGHWGLNMPIDVLRGSRAKKILQVQFDKLPLHGLGKNYPANWWKALGHQLIFQGYLKEIVSDTYRTISVSSKGEQFLASSRPDYQPPLVLTLTSEMLGEEDNGNTQEEFKTLSTSESERFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIRKIALARPSTKARLANIDGVNQHLVTRYGDHFLQVIQKLSQGLNLSLDGKATSQTIEGRKVSPITKKTKLTSVKLISTELTSTKLTSSRLTPAKLEAWKMWHEDGRSIQEIANSPGRSAPIKEQTVADYLLEAAQEGLAFDWVRFSEMIGLTVEIISEIQSAISKVGSTDKLKPIKNELPEEITYQHIKTYLSMRNCGITLEAVQSENQQTGEDDEPAHNASNLSDPTLNTCHVESHCEDNISAKSSTEKGDLEINEVPTLSVNGSEVQKLPLANEREFPNKRQKVGETKEANSTKLKATESSVVEWLKNLNEGATLSDVLEHFNGSSEDSVIELLNCLECDFSIYRKGNMYRVM | 932 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00524 | 932 | MobiDBLite | consensus disorder prediction | 784 | 805 | - | - | |
Cca01g00524 | 932 | SMART | RQC_2 | 407 | 511 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Cca01g00524 | 932 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 5 | 759 | - | - | |
Cca01g00524 | 932 | SMART | ultradead3 | 13 | 208 | IPR014001 | - | |
Cca01g00524 | 932 | Pfam | RQC domain | 403 | 501 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Cca01g00524 | 932 | Pfam | RecQ zinc-binding | 351 | 400 | IPR032284 | - | |
Cca01g00524 | 932 | Pfam | HRDC domain | 548 | 613 | IPR002121 | GO:0003676 | |
Cca01g00524 | 932 | Gene3D | - | 1 | 198 | IPR027417 | - | |
Cca01g00524 | 932 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 370 | IPR001650 | - | |
Cca01g00524 | 932 | Gene3D | - | 200 | 401 | IPR027417 | - | |
Cca01g00524 | 932 | SUPERFAMILY | HRDC-like | 541 | 618 | IPR010997 | GO:0000166|GO:0044237 | |
Cca01g00524 | 932 | Pfam | Helicase conserved C-terminal domain | 218 | 325 | IPR001650 | - | |
Cca01g00524 | 932 | Gene3D | HRDC domain | 538 | 619 | IPR044876 | - | |
Cca01g00524 | 932 | Gene3D | - | 402 | 525 | IPR036388 | - | |
Cca01g00524 | 932 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 25 | 192 | IPR014001 | - | |
Cca01g00524 | 932 | PANTHER | WERNER SYNDROME ATP-DEPENDENT HELICASE | 5 | 759 | - | - | |
Cca01g00524 | 932 | SUPERFAMILY | "Winged helix" DNA-binding domain | 398 | 504 | IPR036390 | - | |
Cca01g00524 | 932 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 57 | 340 | IPR027417 | - | |
Cca01g00524 | 932 | Pfam | Helix-turn-helix domain | 672 | 769 | IPR029491 | - | |
Cca01g00524 | 932 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 6 | 458 | IPR004589 | GO:0004386|GO:0006310 | |
Cca01g00524 | 932 | ProSiteProfiles | HRDC domain profile. | 543 | 623 | IPR002121 | GO:0003676 | |
Cca01g00524 | 932 | SMART | hrdc7 | 543 | 623 | IPR002121 | GO:0003676 | |
Cca01g00524 | 932 | Pfam | DEAD/DEAH box helicase | 19 | 178 | IPR011545 | GO:0003676|GO:0005524 | |
Cca01g00524 | 932 | CDD | DEXHc_RecQ | 6 | 199 | - | - | |
Cca01g00524 | 932 | CDD | SF2_C_RecQ | 200 | 335 | - | - | |
Cca01g00524 | 932 | SMART | helicmild6 | 245 | 326 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00524 | Cca-Chr1 | 6500476 | 6511988 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g00524 | 235 | 342 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 26.852 | 4.20e-06 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00524 | K03654 | - | gmx:100797777 | 1604.34 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca01g00524 | 01 | 6500476 | 6511988 | Cca01g00524 | 01 | 6500476 | 6511988 | ECH |