Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00513 ATGTCAAACCGAGTTTGCATAAAAAAGGGGTTGTCGACACTAACTGGCGTGAAGTTTGTGGGCAAACAGGGACACCCAAATGATTTTTCCATGTGTGTTCGATCCAAAACAACGTCTGCTCAGTATGTAGCATCGAGATTTCGAGACCCCACGTTTGAGAAACTCATGGAAAACTACAAGAACCTTTTCAAAGTCATTGCCATTCAAGACCTCATTCTTGCCAACCCAAAGAACCCCTCAGTCTCCATTGATTTCCTCTCCAAGCTCTCCCAGAAGCTCCACCTAAACCGCGGCGCCACTGCCTTCCTCCGCAAGTTTCCTCACATCTTCCACATTTACTATGACCCTTCCAAATTGAAGCCCTTTTGCAGGTTAACTGATGCTGCTCTTGATGTTTCGCGGCAGGAGGCAGTGGCCATCAATGCCTCTTTGCCTGTTGTTGTTGAAAGACTTGTTCGGATACTGTCCATGTCTGCATCCAAAGTGGTGCCTCTTAGAGCTGTTTTCAAGGTCTGGAAGGAGCTTGGGCTGCCCGATGATTTTGAGGATTCAATCATATCAGCTAATTCTGGTGTTTTTCAGCTGTGTGATGCGCCGGAAGCGAATACGCATTTGTTGAAGCTGGTTGGTGGTGTTTCCAGCAATGGTTTAAGGGCAGCTGTTGAGGATTGGAGGGTTGTTGAGTGCTGCAAGGACGAATGCAGTGTTGATAGGATGGAAATGCAGTTCAGTTTCAAACACGGGTATCCTCCCGGGATGAGGTTGAGCAAGAATTTCAAGGCTAAGGTGAAGGAATGGCAGAGGTTGCCATATGTGGGGCCTTACGAGGTAGTGAGTGAGAAGAAGAAGTCTAAGGCTGGAATGATGGCTATGGAGAAGCGGGCAGTGTCAATTGTTCACGAGTTCCTGAGTTTGACAGTGGAGAAGATGGTGGAAGTTGAGAAGATCAGCCAGTTTAGAAAATGGTTAGGGATTGATTTAAATATAAGGGATCTGTTCCTGGACCACCCTGGGATTTTCTATTTGTCTACGAAGGGTAAAAGGCATACTGTTTTCCTGAGGGAAGCTTATGAACGAGGGTGTTTGATAGAACCCAATCCTGTCTATGATGCAAGAAGAAGGCTACTTGATCTTGTTGTTTTAGGACGTCGGGGCCTGCCAGCTATTAATTCGAAGTTGCAGGATACAAGCAGCTGCAATGAGGTTGGACAAGAGGAAAACCAGCAAAGACATGACTCATTACCATCCTGA 1251 0.4644 MSNRVCIKKGLSTLTGVKFVGKQGHPNDFSMCVRSKTTSAQYVASRFRDPTFEKLMENYKNLFKVIAIQDLILANPKNPSVSIDFLSKLSQKLHLNRGATAFLRKFPHIFHIYYDPSKLKPFCRLTDAALDVSRQEAVAINASLPVVVERLVRILSMSASKVVPLRAVFKVWKELGLPDDFEDSIISANSGVFQLCDAPEANTHLLKLVGGVSSNGLRAAVEDWRVVECCKDECSVDRMEMQFSFKHGYPPGMRLSKNFKAKVKEWQRLPYVGPYEVVSEKKKSKAGMMAMEKRAVSIVHEFLSLTVEKMVEVEKISQFRKWLGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIEPNPVYDARRRLLDLVVLGRRGLPAINSKLQDTSSCNEVGQEENQQRHDSLPS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00513 416 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 25 411 IPR045040 GO:0003723
Cca01g00513 416 PANTHER OS04G0618900 PROTEIN 25 411 - -
Cca01g00513 416 MobiDBLite consensus disorder prediction 397 416 - -
Cca01g00513 416 Pfam Plant organelle RNA recognition domain 48 383 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00513 Cca-Chr1 6371244 6374096 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00513 - - gmx:100808404 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00513 01 6371244 6374096 Cca02g01442 02 32991514 32993370 PCT