Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00511 ATGCCgcggagtgagagtgaaagcgagagcgagagcgagaAGAAACCTCCGAGAATAGAGCCGCCGGGCGACCTCCGATGCCGGCGGCGCGACGGCAGGTCATGGCGGTGCCGCCACTGGAGGATTCACGACCAGCTCTACTGCGAGCACCATTTCCTTTCCTCCAGAGCCAGGTACTCTCACGTTGAACAAACCAAACCTAAGGCTTCCACTTCTTCACCGCAAATAGACAATGAGAAGAATAAGAAGAACAATTCGAAGAGGCTTCGCGAACCAGACGAAGCGACTGTTCCGGAGAAAGCCAAAACGAAGAAGGTGAAATTCGAAGCGGAACGAGAACGAGAGCGGAAGTCTCCGAACGAGGAAGTGGTGCCGTTACCAGACCGGAAAACTAGGAGCAGAGAGAAGATCAAGCAAGCGCTTATTCTAATGGATGATGATTTCGACACCGACGAAGGAAAACCGGTGAAAACCGCGAGGACGAAGTCGTCTTCTTCTTCTTCCTGCAAGTTCAACGACGCGAAGCAGAAAGCCTCTGTCTCCGAGTCTCGAATGTGTCATCAGTGCCAGAAGAGTGATAGGACCGTTGTTCACTGTCGGAATCGGAACTGTTGCAAACGATTTTGCGTCCCATGCATTCGGAGATGGTATCCACAAATGTCCAAGGAGGAAATAGCTGAATCTTGTCCATATTGTCGAGGTAATTGTAACTGCAAGGCATGTTTACGTAGAAAAGATGTAAATACGGTTTCTGGAGTGCCTCAAAATGAAGATGAAAAGATTCAACATTTGAAGCATTTGTTGCGAGCATTGTATCCTTTTCTGGAACAATTTAATCATGAGCAGCAGTTGGAAATGGAGATGGAAGCAAAGAGTAAAGGGTTACTGCTTCCCGATGTAGAAGTTGTCCAAATCGACTGTTCCAAATATGAACGTATTTATTGCAACAATTGCAAAACCTCTATTATTGATTTTCATAGGAGCTGTCCGAATTGTTCATATGATCTTTGCCTTACTTGTTGCCGGGAAATTCGTGGCAATTTCTTGCCAGGGGAATTAGTTGAGCAGTGTATTGATGCTTCTAATGCTCATTCGCATAATGGAGAGCCTTTAGATCTGCAGTCATGCAACAAAGAATCATCAGACATTTGTCTTGAGTCAAGCCCTGTGAGACCAAAGTATTTGTGGAGGGCTATGAAAAATGGTGCGATCCCCTGTTCACCAGAGGATAATGATGGTTGTGGATATGAATATCTTGAGCTGAAGTGTATATTTCCTCAAAATTGGATTTCAAAGTTAAGGGAAAAAGTGAAAAGATTAATCAAAGTACATGGACTAGAAGGTATGCCCACAGTTCCTGCACGGTGCAATTCTTGCTTCAAATCTCTTGATGAAATTGACTCCATCAATGACAAGTTGCGACAAGCTGCTGCACGAGAAGGCTCAAGTGACAACTATTTGTACTGTCCTTCAGCTAGTGATGTTAAATGTGGGGATCTGGAACATTTCCAGGGCCATTGGATTAAGGGAGAGCCCGTTATTGTTAGGGATGCTCTTGAATTAACCTCTGGCTTGAGCTGGGAGCCAATGGTAATGTGGCGTGCAATGCGTGAGTTGACTTATCATGGTTCCAAACATTTGAATGTGAAAGCAATTGACTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGATACTCAGAGGGCCGTGCTCATCGTGACTCCTGGCCAGAGATGCTCAAGCTCAAAGATTGGCCTCCATCTAATCTATTTGAGCAGAGGTTACCGCGTCATGGTATGGAGTTTATTAGTGCCTTACCCTACAAAGAGTATACGCATCCTCGCAGTGGTTTTCTTAACTTGGCCACAAAGCTACCAGAAGAGTCTTTGAAACCTGATTTGGGGCCAAAGACATATATAGCATATGGCTTTGCTGAAGAGCTTTTACGTGGAGATTCGGTGACCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATTTTGACACATACTGAAGAGGTGACCTTCACTTCTCAACATCTTACCAAAATAGAGACGTTGAAACAAAAATATGCTGCTGAAGACCTAAGTGAACTTTTTAAGGTTTTGCAGAATGATAATTCTACAGTGAAGTGCAAATCCATATCAGAAGATAATATTTCATTGCAGGCAGCTGATGACTTGTCAGTTCTTAATGGGTCTTCCCTTATCCAAATGTCAAGAATGGATAATGATGGGCCCGGCAGAAAGCATGCCACTGTTAAACTAACAAATGATTGTACTTCACAAAATAGGAGAAGAAAAGAAGTGCAAGATGAGATTACTAACAAAATAGGAGCAAATTCAGGAAATTCATTGGAAAAGGAAACCGGTGAAATGATAAACTCTGAAGAAGGGAATGCAATTATTGTGAGGGAAAATGTAGTTAAATCACCACATGATTTTGATATGAAGTCAGAATTATATGCTACGAGTACCAAGTTTCAAATAGGGAAAAAGGATTGGAAGGCGGAAAATGTTGGGGATGTGAAAAAATTTAATACTGTTTTTTCCATTGGGCATACTTCAACGGAGGAGGTGCAGCAACAAGATGCTGGATGTATTAGTCATCCTGTGGACTCTGTAAATATGCACATTGGACAAGAATTTGCCGAGGGAGGTGCTGTCTGGGATATTTTTCGGAGGCAAGACGTGTGCAAGCTTGAAGAATACCTTAGGAAGCATTGTAGGGAATTCAGGCATCTCCATTGTTCTCAAGTGGATCAGGTTTTTCACCCCATTCATGATCAAGTTTTTTATCTGAATTCTTATCATAAAAGGAAACTCAAAGAAGAATTTGGAGTTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCTGTTTTTATACCTGCCGGGTGTCCCCATCAAGTTAGAAACTTAAAGTCGTGCATAAAGGTTGCTCTAGACTTTGTCTCCCCTGAAAATATCCAAGAATGTATTCGTCTGACCAACGAATTTCGTACTCTTCCATCAAGCCATAAAGCaaacgaagacagacttgggGTGAAGAAAATGTGTCTCCATGCATTAAGCGAGGCTGCAGACCATTTAGAGCGGAGCAGCTCGAAGAGTAGAAATTAA 3138 0.4197 MPRSESESESESEKKPPRIEPPGDLRCRRRDGRSWRCRHWRIHDQLYCEHHFLSSRARYSHVEQTKPKASTSSPQIDNEKNKKNNSKRLREPDEATVPEKAKTKKVKFEAERERERKSPNEEVVPLPDRKTRSREKIKQALILMDDDFDTDEGKPVKTARTKSSSSSSCKFNDAKQKASVSESRMCHQCQKSDRTVVHCRNRNCCKRFCVPCIRRWYPQMSKEEIAESCPYCRGNCNCKACLRRKDVNTVSGVPQNEDEKIQHLKHLLRALYPFLEQFNHEQQLEMEMEAKSKGLLLPDVEVVQIDCSKYERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCREIRGNFLPGELVEQCIDASNAHSHNGEPLDLQSCNKESSDICLESSPVRPKYLWRAMKNGAIPCSPEDNDGCGYEYLELKCIFPQNWISKLREKVKRLIKVHGLEGMPTVPARCNSCFKSLDEIDSINDKLRQAAAREGSSDNYLYCPSASDVKCGDLEHFQGHWIKGEPVIVRDALELTSGLSWEPMVMWRAMRELTYHGSKHLNVKAIDCLDWCEVEINIHQFFKGYSEGRAHRDSWPEMLKLKDWPPSNLFEQRLPRHGMEFISALPYKEYTHPRSGFLNLATKLPEESLKPDLGPKTYIAYGFAEELLRGDSVTKLHCDMSDAVNILTHTEEVTFTSQHLTKIETLKQKYAAEDLSELFKVLQNDNSTVKCKSISEDNISLQAADDLSVLNGSSLIQMSRMDNDGPGRKHATVKLTNDCTSQNRRRKEVQDEITNKIGANSGNSLEKETGEMINSEEGNAIIVRENVVKSPHDFDMKSELYATSTKFQIGKKDWKAENVGDVKKFNTVFSIGHTSTEEVQQQDAGCISHPVDSVNMHIGQEFAEGGAVWDIFRRQDVCKLEEYLRKHCREFRHLHCSQVDQVFHPIHDQVFYLNSYHKRKLKEEFGVEPWTFIQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTNEFRTLPSSHKANEDRLGVKKMCLHALSEAADHLERSSSKSRN 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00511 1045 ProSiteProfiles JmjC domain profile. 619 1006 IPR003347 -
Cca01g00511 1045 Gene3D Cupin 833 1015 - -
Cca01g00511 1045 Gene3D Cupin 486 725 - -
Cca01g00511 1045 ProSiteProfiles WRC domain profile. 21 70 IPR014977 -
Cca01g00511 1045 SUPERFAMILY Clavaminate synthase-like 494 1034 - -
Cca01g00511 1045 Pfam JmjC domain, hydroxylase 893 989 IPR003347 -
Cca01g00511 1045 ProSiteProfiles Zinc finger RING-type profile. 186 233 IPR001841 -
Cca01g00511 1045 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1039 IPR045109 GO:0032454|GO:0033169
Cca01g00511 1045 MobiDBLite consensus disorder prediction 64 79 - -
Cca01g00511 1045 SMART cupin_9 600 1006 IPR003347 -
Cca01g00511 1045 MobiDBLite consensus disorder prediction 63 132 - -
Cca01g00511 1045 CDD cupin_RmlC-like 929 990 - -
Cca01g00511 1045 Pfam WRC 24 60 IPR014977 -
Cca01g00511 1045 MobiDBLite consensus disorder prediction 80 132 - -
Cca01g00511 1045 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00511 Cca-Chr1 6349606 6363749 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca01g00511 JmjC 1.3e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00511 K15601 - gmx:100808936 1130.16