Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00502 ATGAAGCTCTCAACATCAGGGTTGGGGCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCTTAGTGTCCCTACCAACTGCTGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAATAGAGAAATTGATGGACACATTCCCAATTATCCTAGCCTGCCACCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATATTGAAACAGATGAAGTATATGCTCAAATGACATTGCAGCCGTTGACCCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCATCAAACTATTTTTGCAAGACATTAACAGCCAGTGACACCAGCACACATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCGGCACAGGAGCTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAATTTCGACATATTTTTCGGGGACAGCCAAAACGGCATCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTTGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTCTAGGAATACGTCGTGCCAATCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCCGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTACAATCCAAGGTTGGCTAGTCCATCTGAGTTTGTCATACCACTCTCGAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAAACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGATGGCCGAATTCTCATTGGCGTTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCCCGAGTGTCTCTATGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCATCATTATTTCCCCTCAGACTGAAACGTCCATGGCATCCTGGCACCTCATCTTTGCATGATGGTAGAGATGAAGCAGCTAATGGACTAATGTGGCTGAGAGGTGGACATGTAGACCAAGGTCTCAACTCTCTGAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCATCTTTACTTGGAAACGATCAGAATCAACAGTACCAAGCTATGTTGGCAGCTGGCTTGCAGAACCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAACTTTCAACAGCCTTTCCACTACCTTCAACAATCAGGAAACAACAATGCTTCTCCTTTGCAACTTCAGCAGCAACAAACAATTCAACAATCGGCGTCTTCCAACTTGCTGCAGCCACAAGCCAATATGATGACTGAGAACCTTTCTCAGCACCTCCTTCAGAAACCACACAACAATCAAGAAGTCCAAGTGCAACAGCAGCAACATACTTTTCAAGACACGCTTTTAATTCCAGGTGATCAGCTCCATCAGAGACAACACTCTGGTGTTCCTTCACCATCGTATTCGAAACCGGATTTCTTGGATGCGAGCATGAAGTTCCCGGCTTCGGTTTCCCCAGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAACTTATCAAGGAGCGGACAGTCCTTGCTGACCGAACAATTACCCCAACAACAGTGGACCCAAAAGTATGCACCTGGTCAGGTCAATGCTTATGGAAGCACTATGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATTGTAATTCAGATGCCCAAAATCCTACACTCTTTGGCGTCAATATTGATTCATCTGGCCTTCTCCTTCCCACCACGGTCCCTGGTTACACCACCTCGTCTGCTGACACTAATTCATCAACAATGCCATTAGGGGAGTCTGGCTTTCAGGGCTCTCTATATGGATGCATGCAAGATACATCTGAGTTGTTGCAAAGTGTAGGGCACGTTGACCCACAAAACCAGTCTCAAACCTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTAACATATCCCGCAGCTATCATGAACTTCGCGAGGAGTTGGGTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTAGAATCCCTTGCACTAAGTTCAGGACAAAGGCTAAATGGTGCTGAATCTCAGGACATTGTTTCTGGACCACCATCTATTGGCTCACTTGAGTACTGA 2526 0.4565 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRLASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEAANGLMWLRGGHVDQGLNSLNFQGAGMLPWMQQRLDPSLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNNNASPLQLQQQQTIQQSASSNLLQPQANMMTENLSQHLLQKPHNNQEVQVQQQQHTFQDTLLIPGDQLHQRQHSGVPSPSYSKPDFLDASMKFPASVSPGQNMLSSLCPEGSGSLLNLSRSGQSLLTEQLPQQQWTQKYAPGQVNAYGSTMSHAQYSGKDSAMVLPHCNSDAQNPTLFGVNIDSSGLLLPTTVPGYTTSSADTNSSTMPLGESGFQGSLYGCMQDTSELLQSVGHVDPQNQSQTFVKVYKSGSVGRSLNISRSYHELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALSSGQRLNGAESQDIVSGPPSIGSLEY 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00502 841 ProSiteProfiles PB1 domain profile. 719 801 IPR000270 GO:0005515
Cca01g00502 841 SMART B3_2 128 230 IPR003340 GO:0003677
Cca01g00502 841 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Cca01g00502 841 Gene3D - 126 229 IPR015300 -
Cca01g00502 841 PANTHER AUXIN RESPONSE FACTOR 1 827 - -
Cca01g00502 841 Gene3D - 715 806 - -
Cca01g00502 841 Gene3D - 293 365 - -
Cca01g00502 841 CDD B3_DNA 127 228 IPR003340 GO:0003677
Cca01g00502 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 827 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca01g00502 841 Pfam Auxin response factor 254 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca01g00502 841 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Cca01g00502 841 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Cca01g00502 841 SUPERFAMILY CAD & PB1 domains 716 791 - -
Cca01g00502 841 Pfam AUX/IAA family 716 801 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00502 Cca-Chr1 6261105 6269459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00502 98 809 B3 DNA Binding Superfamily AT5G37020 67.956 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca01g00502 AUX_IAA 4.6e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00502 - - gmx:100784373 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00502 01 6261105 6269459 Cca05g01391 05 32212978 32226898 PCT