Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00500 ATGGTGATGCAACTCAAGCTCCTAGCCTTAACCTTGTTGTTATGGTTGAGGGTTGAGGGTGCATTAGGAGACCCTCAAATTAGTTTGCTGAACAAGGGGTGTAGCCAATACAACGCAACCAATTTGAGCAATTTCTACGAAAATCTGAACGCAACTTTGGATAACCTTATAGCACAGGTTAGGAAGCAAAGAAAGCACTTTGCCATGGCTCAAGAAGCCAGAGGAGCAGACCCTGTCTATGGCATGTTTCAATGTAGGAACTACCTCTCTACGGCTGACTGcgccgcctgcttcgccgccgccgccgccCAAGTCCGCAATTGCTCCACCGGAGCCAACGGTGCCCGGGTCATTTATGATGGCTGCTTCCTTAGGTATGAGAGCTATGGCTTCTTTGAGCAGACCACTATGCCTGGCGACAGTATAATTTGTGGAAATGAGAAAGCAGCTGAAGCCAATGGTTTTAATGCAACTGCACAGCAAGTGCTGAAGGATCTTCAAATTGCAACACCCAAAATCACGGGTTACTATGCAGCTACCAAGACAAAAGTGGCCGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAGAGTGGTTGTCTGGAATGCCTCACAGTTGGATACAAAAACATAAACCTTTGTTTACCCAATAAAAATGGTATAGCATTTGATGCTGGCTGTTTTATGAGATACTCAGAGACAGCCTTTTTTGCTGATAAGCAGACCATCGATATCACACCCTTGAAAAAAGGAGGTTCAAGCAAGAAAGGAGTCATCATTGGTGGTGTTGTTGGAGGAGTAGGTCTTGTTGTGATCCTCCTTGCACTATTTGCCTTGCTTAGACGGTACAAGAAACCCAAGAAGGCTCCAAGAGGTGACATATTGGGAGCAACTGAATTGAAAGGTCCAGAAACCTACAGGTATAAGGGCTTGAAGTCTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAAGTAGTTGCAGTGAAGAAATTAATTTTAGGCCATTCCAGGAAGATCGATGAACAATTTGAAAGTGAGGTCAAGCTTATAAGTAATGTTCATCATAAAAATCTAGTTCGACTTCTTGGATGTTGCATTAATGGCCAAGAGAGAATTCTTGTTTATGAATACATGGCAAATAACAGCTTAGACAGATTCTTATTTGGTCAAAAGAAGGGTTCTCTCAATTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTACATGAGGATTTCCACATTTGCATCATACATAGGGATATAAAAACCAGCAATATCCTATTAGATGAAGATATGCAGCCAAAAATTGCTGATTTTGGGTTGGCAAGACTTCTACCGGAAGACCAAACTCATCTTAGTACAAGATTTGCAGGAACATTGGGATATACAGCACCTGAATATGCAATCAATGGTCAGTTATCAGAAAAGGCTGATACATACAGCTTTGGCGTTGTGGTCCTAGAAATCATAAGTGGCCAAAAGAGTAACGAATTTAGGGCAGATGCTGAAGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAAATATGCTTTTGGAGTTGGTTGACGAGACATTGGACCCTGAGGACTATGATGCAGAAGAAGTGGAGAAGATTACAGAGATTGCTTTGCTTTGCACTCAAGCATCAGCTGCTGCAAGGCCAACAATGTCTGAGTTAGTACTCCTACTCAAAAACAAGAATTCACTGGGGCAAATGAGGCCTTCTATGCCTGTCTTAGTTCAGTCTAACTTTAGGACCAAGGTAGAAACATCTACCTCAACTGGTTCCTCTATATCTAATGCTACTGCTACTGTTTCCATGCTCTCAGCTAGATGA 1926 0.4123 MVMQLKLLALTLLLWLRVEGALGDPQISLLNKGCSQYNATNLSNFYENLNATLDNLIAQVRKQRKHFAMAQEARGADPVYGMFQCRNYLSTADCAACFAAAAAQVRNCSTGANGARVIYDGCFLRYESYGFFEQTTMPGDSIICGNEKAAEANGFNATAQQVLKDLQIATPKITGYYAATKTKVAGGAIYAIAQCAETVSESGCLECLTVGYKNINLCLPNKNGIAFDAGCFMRYSETAFFADKQTIDITPLKKGGSSKKGVIIGGVVGGVGLVVILLALFALLRRYKKPKKAPRGDILGATELKGPETYRYKGLKSATKNFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGHSRKIDEQFESEVKLISNVHHKNLVRLLGCCINGQERILVYEYMANNSLDRFLFGQKKGSLNWKQRYDIILGTAKGLAYLHEDFHICIIHRDIKTSNILLDEDMQPKIADFGLARLLPEDQTHLSTRFAGTLGYTAPEYAINGQLSEKADTYSFGVVVLEIISGQKSNEFRADAEGEFLLQRAWKLYEENMLLELVDETLDPEDYDAEEVEKITEIALLCTQASAAARPTMSELVLLLKNKNSLGQMRPSMPVLVQSNFRTKVETSTSTGSSISNATATVSMLSAR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00500 641 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524
Cca01g00500 641 CDD STKc_IRAK 328 595 - -
Cca01g00500 641 Coils Coil 46 66 - -
Cca01g00500 641 ProSiteProfiles Gnk2-homologous domain profile. 27 131 IPR002902 -
Cca01g00500 641 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 15 638 - -
Cca01g00500 641 Gene3D - 26 131 IPR038408 -
Cca01g00500 641 Gene3D - 140 240 IPR038408 -
Cca01g00500 641 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 638 - -
Cca01g00500 641 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Cca01g00500 641 Pfam Salt stress response/antifungal 144 237 IPR002902 -
Cca01g00500 641 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Cca01g00500 641 SUPERFAMILY Protein kinase-like (PK-like) 307 609 IPR011009 -
Cca01g00500 641 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Cca01g00500 641 Gene3D Transferase(Phosphotransferase) domain 1 399 609 - -
Cca01g00500 641 SMART serkin_6 322 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00500 641 Pfam Protein tyrosine and serine/threonine kinase 325 591 IPR001245 GO:0004672|GO:0006468
Cca01g00500 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Cca01g00500 641 ProSiteProfiles Protein kinase domain profile. 322 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00500 Cca-Chr1 6230545 6236552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00500 2 641 Receptor kinase-like Gene Family AT1G70520 35.812 1.95e-129 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g00500 PK_Tyr_Ser-Thr 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00500 - - gmx:100811953 976.467