Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00499 ATGGTGCAACTGAAGGTTGTAACCCTAACAACCttgttgatgttattgttgttgtCATGGTGGAGGTTTGAGGGTGCAGTAGGAGACCCTCAAACCCTATTACTCAAACAGGATTGCAGCGGATACATAGCTCCCGACTTGTCCAACTTCAACCAAAATCTTAACGCAAGTTTGGCAGACCTGAGATCACAGGTTACCAACCAAAGCAAGCACTTTGTCACGGCTCAAGCAACCACCGGAGCAAACCCTGTCTACGCCATGTTTCAATGCAGGAACTACCTCTCCATCACCGACTGCGCCACCTGCTTAGCCACCGCCATCGCCCAAATCCGCAACTGCTCCGCCGGAGTCAACGGTGCTCGTGTCATTTACGACGGCTGCTTCCTCAGGTTCGAGAGCAATGACTTCTTTAGCCAGATCATGCCTCGCAACAGCATACTTTGTGGAAATCAGACTGCAGAAGAAAGCACTGATTTTGCTGCAGCTGGACAGCAAGTGCTGATGGATCTACAAGTAGCAACACCAAAAATCAATGGCTTCTATGCAGCTACCAAGACACAATTTTCTGGCGGTGCAATCTATGCTATTGCACAATGTGCTGAATCTCTTGCACAAGATACTTGTATGGAATGCTTGTCAGTTGAACATAGCAGCATAAAAGGTTGTCTTCCCAAGACAAATGGTAGGGCATTCGATGCTGGTTGCTTTACGAGATACTCCGAGACACCCTTCTTTGCTGATAACCAAACCACTGATATCACTCCCTTCTTAAAACAAGGAGGAAGTTCAAGCAAGAAGTGGGTCATTATTGGTGCTGTTGTTGGGGGTGTAGTCTTTGTTGTGATCCTTCTTTTATTATTTCCCTTGCATAGAAGATCCCAAAGTCCCAAGAGAGTTCCTAGAGGTATCATATTGGAAGCGTCTGAGTTGAAACCTCCAACCAAGTATAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTTAGTGAGAAGAATAAACTAGGAGAAGGTGGCTTTGGTGCTGTATACAAGGGAACTTTGAAAAATGGGAAAGTTGTTGCAGTCAAAAAATTAATTACAGGAAAATCCAGCAAGATAGATGATGATTTTGAAAGTGAAGTAACGCTTATAAGTAATGTTCATCACAGAAATCTAGTTCGGCTTCTCGGTTGTTGCAGTAAAGGCGAAGACAGAATTCTTGTTTATGAATACATGGCAAACAACAGTCTTGACAAAAGCTTATTTGGTAACAAAAAAGGTACTCTCAACTGGAAACAACGATATGATATAATTTTGGGCATAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGACATTAAGAGTGGAAATATCCTCTTGGACGATGAATTTCAACCCAAAATTTCTGATTTTGGGTTGATAAGGCTCCTACCTGGGGACCAATCTCATCTTAGCACAAAATTTGCAGGAACAATGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAGAAAAAGCTGATACATATAGCTTCGGAATTGTAGTCTTAGAAATCATAAGTGGCCAAAAGAGTACtgatgtgaacatcgttgatgatgacaatgatgatgaATACCTTCTCCGACGAGCATGGAAGTTGTATGAGAGAGGCATGCACTTGGAGTTGGTGGACAAAAGCTTAGATCCTAATACCTATGATCCAGAAGAAGTTAAGAAAGTCATAGATATTGCTTTGTTGTGCACTCAAGCATCGACTGTAGTAAGGCCAGCCATGTCTGAAGTAGTAGTCTTACTCAGTAGCAATGAATTTGTTGAGCATATGAGACCTTCAATGCCTATCTTTGTTGAGTCAAAATTAAGGCCCCACAGAGATATCTTTGCTTCAATTGGTTCCTCTGAATCTAATGCTGCTTCTTCCAATTCTATAGTACCTGTTTGA 1950 0.4108 MVQLKVVTLTTLLMLLLLSWWRFEGAVGDPQTLLLKQDCSGYIAPDLSNFNQNLNASLADLRSQVTNQSKHFVTAQATTGANPVYAMFQCRNYLSITDCATCLATAIAQIRNCSAGVNGARVIYDGCFLRFESNDFFSQIMPRNSILCGNQTAEESTDFAAAGQQVLMDLQVATPKINGFYAATKTQFSGGAIYAIAQCAESLAQDTCMECLSVEHSSIKGCLPKTNGRAFDAGCFTRYSETPFFADNQTTDITPFLKQGGSSSKKWVIIGAVVGGVVFVVILLLLFPLHRRSQSPKRVPRGIILEASELKPPTKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTLKNGKVVAVKKLITGKSSKIDDDFESEVTLISNVHHRNLVRLLGCCSKGEDRILVYEYMANNSLDKSLFGNKKGTLNWKQRYDIILGIARGLAYLHEEFHVSIIHRDIKSGNILLDDEFQPKISDFGLIRLLPGDQSHLSTKFAGTMGYTAPEYALHGQLSEKADTYSFGIVVLEIISGQKSTDVNIVDDDNDDEYLLRRAWKLYERGMHLELVDKSLDPNTYDPEEVKKVIDIALLCTQASTVVRPAMSEVVVLLSSNEFVEHMRPSMPIFVESKLRPHRDIFASIGSSESNAASSNSIVPV 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00499 649 Pfam Salt stress response/antifungal 148 241 IPR002902 -
Cca01g00499 649 Pfam Salt stress response/antifungal 45 133 IPR002902 -
Cca01g00499 649 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Cca01g00499 649 CDD STKc_IRAK 334 599 - -
Cca01g00499 649 ProSiteProfiles Gnk2-homologous domain profile. 141 244 IPR002902 -
Cca01g00499 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Cca01g00499 649 ProSiteProfiles Protein kinase domain profile. 328 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00499 649 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 21 641 - -
Cca01g00499 649 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 641 - -
Cca01g00499 649 SUPERFAMILY Protein kinase-like (PK-like) 311 618 IPR011009 -
Cca01g00499 649 SMART serkin_6 328 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00499 649 Gene3D Phosphorylase Kinase; domain 1 296 404 - -
Cca01g00499 649 Pfam Protein tyrosine and serine/threonine kinase 331 600 IPR001245 GO:0004672|GO:0006468
Cca01g00499 649 Gene3D Transferase(Phosphotransferase) domain 1 405 614 - -
Cca01g00499 649 Gene3D - 143 244 IPR038408 -
Cca01g00499 649 Gene3D - 31 136 IPR038408 -
Cca01g00499 649 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00499 Cca-Chr1 6214438 6219908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00499 2 628 Receptor kinase-like Gene Family AT1G70520 37.598 5.15e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g00499 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00499 - - gmx:100776342 1002.28