LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g00498	ATGCAGGTGCAACATAACCTTGTAGCCttggccttggtggtgttgtggtcatggtgttggtggAGCTTTGAGGGTGTAGTAGGAGACCCTCAAATCTTTCTACTGAAATGGGATTGCAGCGGTTTCACGGTACCCAACTTGTCGAACTTCAACCAAAACCTAAACGCGAGTTTGGCAGATCTGAGAGCACATGTGAGGAACCAAAGCAAGTACTTTGCCACGGCTCAAGCAACCAGCGGGACAGATCCTGTCTATGCTATGTTTCAATGCAGGAACTACCTCTCCATCACTGACTGCGCCACCTGCTTGGCCGCCGCCACCGCCCAAATCCGCAACTGCTCCGCCGGATCCAACGGTGCCCGTGTCATCTACGATGGCTGCTTCCTCAGGTACGAGAGCAATGAATTCTTCAACCAGATCATGTCTCGCAGCAGCATACTCTGTGGAAATCAGACTGTGGATGAAAGCAGTGATTTCAGTGCAGTTGGACAACAAGTGCTGATGGATCTACAAATTGCAACACCAAAAATTAGTGGCTTCTATGCAGCTACCAAGACACAGGTGTCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTCTCACACAAGACACTTGTAAGGATTGCTTATCAATTGAACAAAGCACCATACAAGGTTGTCTTCCCAATACAAATGGTAGGGCATTCGATCCTGGTTGCTTTATGAGATATTCAGAGACACCCTTCTTTGCCGATAATCAAACCATTGATATCAATCCATTCTTGAAACAAGGAGGAGGACATTTAAACAAGAAGTGGATCGTTATTGGTGGTGGTGTTGGAGGTGCACTCCTTGTTGTGATCCTTATTTCATTATTTCCCAGGCATAGAAGATCCCAAAGTCCCAAGAGAGTTCCCAGAAGTAACATATTGGGAGCAACTGAATTGAAAAATGCAACCAAGTATAAGTATAGCGACTTGAAAGCTGCAACAAAAAATTTTAGCGAAAAAAATAAACTAGGAGAAGGAGGTTTTGGCGCGGTTTACAAGGGGACCATGAAAAATGGAAAAATTGTTGCGGTCAAAAAATTAATTTCAAGAAAATCTAACAAGATAGATGATGAGTTTGAAAGTGAGGTAACACTTATAAGTAATGTTCATCATAGAAATCTGGTTCGGCTTCTTGGTTGTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTACGAATACATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTAAAAGAGAATGCTCCCTCAACTGGAAACAACGCTATGATATAATTTTGGGCACAGCAAGGGGATTGACTTATCTGCATGAAGAATTTTATGTTTCTATCATACATAGGGATATTAAGAGTGGAAATATTCTTTTGGATGAAGAACTTCAACCCAAAATTTCCGATTTTGGATTGGTGAGACTCTTACCTGAGGATCAATCTCATCTTAGCACAAGAGTTGCAGGAACATTGGGATACACAGCACCCGAATATGTACTCCATGGTCAATTATCAGGAAAGGCCGATACATATAGCTATGGAATTGTAGTTCTGGAAATTATTAGTGGTCAAAAGTGTACTGATGTGAATGATTGTGATGATGATGAATACTTACTAAGACGGGCATGGAAGTTATATGAGAAAGGCATGCAGTTGGAGCTGGTGGACAAAAGCTTAGACCCTAATACCTATGATGCAGAAGAAGTTAAGAAAGTCATAGGCATTGCATTGTTGTGCACACAAGCATCGGCTGCAATGCGGCCAGCTATGTCTGAAGTAGTACTCCTACTTAGTAGCAATGACTTACTTGATCATATGAGACCTTCAATGCCTCTCTTTATTGAGTCAAATTTAAGGCCCCATAGAGATATCCCTATCTCAACTGGTTCCTCTACATCTAATGTTACTACCTCCAATTCTATAGTACCTGCTCGATGA	1947	0.4119	MQVQHNLVALALVVLWSWCWWSFEGVVGDPQIFLLKWDCSGFTVPNLSNFNQNLNASLADLRAHVRNQSKYFATAQATSGTDPVYAMFQCRNYLSITDCATCLAAATAQIRNCSAGSNGARVIYDGCFLRYESNEFFNQIMSRSSILCGNQTVDESSDFSAVGQQVLMDLQIATPKISGFYAATKTQVSGGAIYAIAQCAETLTQDTCKDCLSIEQSTIQGCLPNTNGRAFDPGCFMRYSETPFFADNQTIDINPFLKQGGGHLNKKWIVIGGGVGGALLVVILISLFPRHRRSQSPKRVPRSNILGATELKNATKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKIVAVKKLISRKSNKIDDEFESEVTLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDKFLFGKRECSLNWKQRYDIILGTARGLTYLHEEFYVSIIHRDIKSGNILLDEELQPKISDFGLVRLLPEDQSHLSTRVAGTLGYTAPEYVLHGQLSGKADTYSYGIVVLEIISGQKCTDVNDCDDDEYLLRRAWKLYEKGMQLELVDKSLDPNTYDAEEVKKVIGIALLCTQASAAMRPAMSEVVLLLSSNDLLDHMRPSMPLFIESNLRPHRDIPISTGSSTSNVTTSNSIVPAR	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g00498	648	ProSiteProfiles	Protein kinase domain profile.	329	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g00498	648	CDD	STKc_IRAK	335	597	-	-
	Cca01g00498	648	Gene3D	Phosphorylase Kinase; domain 1	293	405	-	-
	Cca01g00498	648	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	25	644	-	-
	Cca01g00498	648	Gene3D	-	142	244	IPR038408	-
	Cca01g00498	648	Gene3D	-	32	136	IPR038408	-
	Cca01g00498	648	SMART	serkin_6	329	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g00498	648	ProSitePatterns	Protein kinases ATP-binding region signature.	335	358	IPR017441	GO:0005524
	Cca01g00498	648	MobiDBLite	consensus disorder prediction	627	648	-	-
	Cca01g00498	648	SUPERFAMILY	Protein kinase-like (PK-like)	314	617	IPR011009	-
	Cca01g00498	648	ProSiteProfiles	Gnk2-homologous domain profile.	141	244	IPR002902	-
	Cca01g00498	648	Pfam	Salt stress response/antifungal	151	241	IPR002902	-
	Cca01g00498	648	Pfam	Salt stress response/antifungal	45	133	IPR002902	-
	Cca01g00498	648	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Cca01g00498	648	Gene3D	Transferase(Phosphotransferase) domain 1	406	609	-	-
	Cca01g00498	648	ProSiteProfiles	Gnk2-homologous domain profile.	32	136	IPR002902	-
	Cca01g00498	648	Pfam	Protein kinase domain	329	545	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g00498	648	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	25	644	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g00498	Cca-Chr1	6207176	6212616	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g00498	6	626	Receptor kinase-like Gene Family	AT1G70520	36.892	9.70e-129	392

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Cca01g00498		Pkinase	2.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g00498	-		-	gmx:100776342	1008.82