Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00497 ATGCTGCAACTTAAGGTGGTGGCATTAATTCTGATATGGTGGAGCAGTGGCGTCGAGCATGCAACAGTTGCAGGCCAACAGAGGCGTCTGATAAACACAGGGTGCAGCCCATTCAACGCTTCGAACGCGCGAAGCTTCTTTGCGAACGTGAATGAAACATTTTCAGACATGAGAGGAGAAATTAGAAACCAGAGCAAGCACTTTGGCACATCGCAGAAATCAAGAGGAGGGGTTCTCACGTATACCATGTTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAAATCCGCAACTGTTCCAGAGCCAACGGTGCTAGAGTCATCTACAATGACTGCTTCCTCAGGTACGAGAGCGAGAGGTTCTACCAACAGACCAATGAACTTGGCAGTGGGGTAACATGTGGGAACAAGACTTCAAATGCCACTGTTGATTTTAGGACAGTTGGGCAAAAAGTGCTAACGGATCTCCAAACTGCAACACCAAAAACCAAAGGGTTTTATGCAGCTACTAAGTCAAAGGTGGCTGGTGGCAGTGCATTTTATGCCATTGCACAGTGTGTTGAAACTGCCACTGAGATTAACTGTCTGAATTGTATGCAAGTCGCATACAAAAACTTACAAAGTTGCCTTCCCAACACAGATGGTACAGCATATGATGCTGGCTGTTTTATGAGATACTCTGAAACACCCTTCTTTGCTGATAATCAAACCATTGACATTGGACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAGTGGGCTATTATTGGTGGTGTTGTTGGAGGTGTTGTTCTCCTCCTTGTGTTGTTTGCCTGTCAATGGTCTAGAAAAACAAAGAAGGTTCACAGAGGTGACATACTGGGAGCAACAGAGTTGAAAGGTCCGGTTAACTACAAGTATAGTGATTTGAAAGCTGCAACAAAAAATTTTAGTGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTGAAAAATGGAAAAATTGTTGCCATAAAAAAACTAGTGTTGGGAAAATCCAGCAAGATGGAGGATGACTTTGAAGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGAAATCTTGTTAGACTTCTTGGTTGCTGCAGTAAAGGGGAAGAGAGAATCTTGGTGTATGAATACATGGCAAATAGTAGTCTTGACAGATTCTTATTTGGTAACAAAGGTTCCCTTAATTGGAAACAACGATATGATATAATTTtgggcactgcaaggggactagcatatttacatgaagaatttcatgtgtccatcatacatagagatataaagaccggtaatatccttctagatgatgatcttcaacccaaaattgctgattttggtttagcaaggcttctcccaggggatCGTACTCATCTTAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCAGAGTATGCAATGCATGGTCAATTATCAGAAAAGGCTGACACCTATAGTTATGGTATTGTAGTTCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGAATGAGGAGAATAGTCATGAATACCTTCTTCAACGAGCATGGAAACTATATGAGAGAGGCATGCAGTTGGAGCTTGTGGATGAGGGGATAGACCCTAATGACTATAGTGCAGAAGAAATGAAGAAAATCATAGAAATTGCTTTGTTGTGTACTCAAGCATCTGCTGCTACAAGACCAACAATGTCTGAAGTAGTAGTCCTACTCAAAAGCAAGAGCTTAATGGAGTACCTACGACCAACTATGCCAGTATTGGCAGTAATTATTCTGATATGGTGGAGCAGTAGTGTtgaagatgcagatgcagcagcagatacaaatCTATTAAACATGGGGTGCAGCTCGTACAACGCTTCAAACTTGCGTAACTTCTTTGCGAATCTGAATGGATCATTTTCGCACATGAGAGAAGAGATTGTGAATGGAAGCAAGCACTTTGTGACAACGGAGCAAGCGAGAGGAGATGTGGTCACATATGCTATGTTTCAATGCAGAAACTATCAGTCCAAAAATGACTGTCTTTCTTGCCTCAACACCGCCACCACCAAAATCCGCAACTGCTCCGCCGGCAACGGCGCCAGAATCATCTACGATGGCTGCTTCCTCAGGTATGAGAGCGCAAGGTTCTACGATCAGACAGCTGAACTAGGCAGTGGGGTATTATGTGGGAACACGACTTCAAGTGTGACTGATTTTGCAGTAACTGGACAACAAGCCCTAATGGATCTCCAAATTGCAACACCAAAAATCAGTGGCTTTTATGCAGCTACTAAGACAGAGGTGGCTGGTGGCAGTGCAATTTATGCTATTGCACAGTGTGTTGAAACTGCCACAGAGGCTAATTGTCTGACATGCTTGCAAATTGGATACAACAACTTACAAAGTTGTCTTCCCAGCGCAGAGGGTAGAGCATATGATGCTGGTTGTTTCATGAGATACTCCACAACACCCTTCTTTGCTGATAACCAGACCATTGATATCACGCCCTTTTTTAAACAAGGAGGTTCTAGCAAGAAATGGGCTATTATTATAGGTGGTGTTGTGGGAGGTGTTGTTGCCCTTCTTGCATTGTTTGCTTGGAGATGGTCTAGAAAATCAAAGGGTGTTCCCAGAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGACTTGAAAACTGCAACAAAAAATTTCAGTACTGAATATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCCGTGAAGAAACTAGTGATGGGGAAATCAAGCAAGATGGAGGACGATTTTGAAGGCGAAGTGAAACTTATAAGTAATGTTCATCATCGAAACCTCGTCAGACTCCTTGGTTGTTGCATCAAAGGCCGAGAAAGAATCCTAGTTTATGAATACATGGCAAATAGCAGTCTTGATAAATTCATATTTGGTAGCAGAAGAGGTTCCCTCAACTGGAAACAACGCTATCACATAATTTTAGGCACGgcaaggggactagcatatctacatgaggaattccatgtatccatcatacatagagatataaagactgctaatatcctcttagatgatgatcttcagcccaaaattgcagattttgggttagcaaggcttctaccaggagaTCGTTCTCATCTTAGCACAAAATTTGCAGGAACATTAGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCTTGGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGAATGATGAGGTTGATGAATACCTTCTTCGAAGATCATGGAAACTGCATGAAAGAGGCTTGCACTTGGAGCTTGTGGACAAGGCAATAGACCCTAATGAATATGATGTAGAAGAAGTGAAGAAAATCATAGAAATTGCTTTACTATGCACTCAAGCATCAGCTGCAACGAGACCAACAATGTCTGAAGTAGTATCCCTACTCAAAAGCAAGAGCTTATTGGAGCACCTGCGACCAAGTATGCCTGTGTTTGTTGAAACAAATATTGCACCTCGGGAAAGCGACACTAGTTCATCTAATGCAACAACCTCCATTTCTGTTGTATCAGCTCGATGA 3705 0.3843 MLQLKVVALILIWWSSGVEHATVAGQQRRLINTGCSPFNASNARSFFANVNETFSDMRGEIRNQSKHFGTSQKSRGGVLTYTMFQCRNYLSKNDCLSCFNTATTQIRNCSRANGARVIYNDCFLRYESERFYQQTNELGSGVTCGNKTSNATVDFRTVGQKVLTDLQTATPKTKGFYAATKSKVAGGSAFYAIAQCVETATEINCLNCMQVAYKNLQSCLPNTDGTAYDAGCFMRYSETPFFADNQTIDIGPYLKQGGSSKKWAIIGGVVGGVVLLLVLFACQWSRKTKKVHRGDILGATELKGPVNYKYSDLKAATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGEERILVYEYMANSSLDRFLFGNKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDRTHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKNEENSHEYLLQRAWKLYERGMQLELVDEGIDPNDYSAEEMKKIIEIALLCTQASAATRPTMSEVVVLLKSKSLMEYLRPTMPVLAVIILIWWSSSVEDADAAADTNLLNMGCSSYNASNLRNFFANLNGSFSHMREEIVNGSKHFVTTEQARGDVVTYAMFQCRNYQSKNDCLSCLNTATTKIRNCSAGNGARIIYDGCFLRYESARFYDQTAELGSGVLCGNTTSSVTDFAVTGQQALMDLQIATPKISGFYAATKTEVAGGSAIYAIAQCVETATEANCLTCLQIGYNNLQSCLPSAEGRAYDAGCFMRYSTTPFFADNQTIDITPFFKQGGSSKKWAIIIGGVVGGVVALLALFAWRWSRKSKGVPRGDILGATELKGPVNYKYNDLKTATKNFSTEYKLGEGGFGAVYKGTLKNGKVVAVKKLVMGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCIKGRERILVYEYMANSSLDKFIFGSRRGSLNWKQRYHIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDDLQPKIADFGLARLLPGDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKNDEVDEYLLRRSWKLHERGLHLELVDKAIDPNEYDVEEVKKIIEIALLCTQASAATRPTMSEVVSLLKSKSLLEHLRPSMPVFVETNIAPRESDTSSSNATTSISVVSAR 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00497 1234 ProSiteProfiles Gnk2-homologous domain profile. 628 731 IPR002902 -
Cca01g00497 1234 Pfam Protein kinase domain 321 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00497 1234 Pfam Protein kinase domain 922 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00497 1234 SMART serkin_6 320 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00497 1234 SMART serkin_6 920 1197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00497 1234 Pfam Salt stress response/antifungal 144 238 IPR002902 -
Cca01g00497 1234 Pfam Salt stress response/antifungal 641 728 IPR002902 -
Cca01g00497 1234 Pfam Salt stress response/antifungal 39 128 IPR002902 -
Cca01g00497 1234 Pfam Salt stress response/antifungal 752 837 IPR002902 -
Cca01g00497 1234 CDD STKc_IRAK 326 592 - -
Cca01g00497 1234 SUPERFAMILY Protein kinase-like (PK-like) 308 616 IPR011009 -
Cca01g00497 1234 ProSitePatterns Protein kinases ATP-binding region signature. 926 949 IPR017441 GO:0005524
Cca01g00497 1234 MobiDBLite consensus disorder prediction 1215 1234 - -
Cca01g00497 1234 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Cca01g00497 1234 CDD STKc_IRAK 926 1192 - -
Cca01g00497 1234 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Cca01g00497 1234 Gene3D Transferase(Phosphotransferase) domain 1 397 600 - -
Cca01g00497 1234 Gene3D Transferase(Phosphotransferase) domain 1 997 1201 - -
Cca01g00497 1234 ProSiteProfiles Protein kinase domain profile. 920 1197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00497 1234 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 616 1224 - -
Cca01g00497 1234 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 605 - -
Cca01g00497 1234 Gene3D - 27 131 IPR038408 -
Cca01g00497 1234 Gene3D - 742 840 IPR038408 -
Cca01g00497 1234 Gene3D - 626 731 IPR038408 -
Cca01g00497 1234 Gene3D - 140 241 IPR038408 -
Cca01g00497 1234 ProSiteProfiles Gnk2-homologous domain profile. 137 241 IPR002902 -
Cca01g00497 1234 ProSiteProfiles Protein kinase domain profile. 320 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00497 1234 SUPERFAMILY Protein kinase-like (PK-like) 905 1207 IPR011009 -
Cca01g00497 1234 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 616 1224 - -
Cca01g00497 1234 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 605 - -
Cca01g00497 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1041 1053 IPR008271 GO:0004672|GO:0006468
Cca01g00497 1234 Gene3D Phosphorylase Kinase; domain 1 282 396 - -
Cca01g00497 1234 Gene3D Phosphorylase Kinase; domain 1 896 996 - -
Cca01g00497 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Cca01g00497 1234 ProSiteProfiles Gnk2-homologous domain profile. 736 840 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00497 Cca-Chr1 6176928 6197547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00497 1 638 Receptor kinase-like Gene Family AT1G70520 35.725 1.04e-118 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g00497 Pkinase 6.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00497 - - vra:106775622 1717.21