Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00496 | ATGTTTCAACTTAATCTTGTGGCCTTGATGACTTTGATGTGGTGGAGCAGTAGTATAGTTGAAGATGCAGTTGCAGACCCACAGACGAATCTGATAAACCCAGGGTGCAGCACATACAACGCTTCCAACGTGCGAAGCTTCTATGCGAATATCAATGGAACGTTTGCAGAGTTGAGAGGAGAGGTGAAGAATGAGAGCACGCACTTTGCGACGGCACAGGAAGCGAGAGGAGATGTTGTGACGTATGCGATGCTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTGCTTGCTTTGACACAGCTTCCACCCAAATCCGCAACTGCTCCTCCGCCAACGGTGCAAGAGTCATCTATGATGGCTGCTTCCTCAGGTATGAGAGCGAGAGGTTCTACGATCAGACGAATGAACTTGGCAGTGGCGTATCATGTGGAAACATAAGTTCAAATGTCACTGGTTTAAAATCAGTTGGACAACAAGTGCTGACCAATCTCCAAACTGCAACACCAAAAATCAAAGGGTTTTATGCAGCTACTAAGACACAGGTGGTTGTTGGTGGTGCTGCAATCTATGCCATTGCACAGTGTGTTGAAACTACCACTGAGGCTAAATGTCTCAGTTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCTTATGATGCTGGTTGTTTCATGAGATACTCTACCACACGCTTCTTTGCTGATAATCAAACCATTGATATCACACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTTGTAGGAGGTGTTGTTCTCATCCTTGCCTTGTTTGCTTGGCGATGGTTTACAAAACCAAAGAGGGTTCCCAGAGGTAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAAAGATTTGAAAGCTGCAACAAAAAATTTCAAGGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTATTCTAAAAAATGGAAAAGTTGTTGCCGTCAAGAAACTAGTATTGGGAAAATCAAGTAAGATGGAAGATGATTTTGAAGGCGAAGTGAAGCTTATAAGTAATGTTCATCATCGTAATCTTGTTAGACTTCTGGGTTGTTGCAGCAAAGGCCAAGAGAGAATCTTAGTTTATGAATACATGGCAAATAGTAGCCTTGACAAATTTTTATTTGGTGACAAAAAAGGTTCTCTCAATTGGAAACAACGATATGATATAATTTtaggcacagcaaggggactagcatatctacatgaggaattccatgtgtccatcatacatagagatataaagacttctaatatccttctggacgatgatcttcaaccaaaaattgctgattttgggttagcaaggcttttgccagaggatCGTTCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATGCAATGCATGGTCAATTATCTGAGAAGGCTGATACCTATAGTTATGGTATTGTAGTCTTAGAAATTATAAGTGGGCAAAAGAGTACAGATGTGAAAGGTGATGAGGAAAGTCGTGAATACCTTCTTCAACGAACATGGAAGTTGTACGAGAAAGGCATGCACTTGGAGCTAGTAGACAAGGACGTAGACCCTAATGAGTATGATGCAGAAGATGTGAGAAAAATAATAGAAATTGCTTTGTTGTGCACTCAAGCATCACCTGCAACAAGGCCAACAATGTCTGAAGTAGTAGTCCTACTCAAAAGCAGAAGTTTATTAGAGCATTTGCGACCAACTATGCCTGTTTTTGTTGAAACGAATATAAAGACAAAGGAAGGCAATTCTAGCTCAACTGCTGGTTCTTCATCTAATGCTACTGCTTCCATTTCTGTTCTATCAGCCAGATGA | 1926 | 0.3806 | MFQLNLVALMTLMWWSSSIVEDAVADPQTNLINPGCSTYNASNVRSFYANINGTFAELRGEVKNESTHFATAQEARGDVVTYAMLQCRNYLSKNDCLACFDTASTQIRNCSSANGARVIYDGCFLRYESERFYDQTNELGSGVSCGNISSNVTGLKSVGQQVLTNLQTATPKIKGFYAATKTQVVVGGAAIYAIAQCVETTTEAKCLSCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTRFFADNQTIDITPYLKQGGSSKKWAIIGGVVGGVVLILALFAWRWFTKPKRVPRGNILGATELKGPVNYKYKDLKAATKNFKAENKLGEGGFGDVYKGILKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKGDEESREYLLQRTWKLYEKGMHLELVDKDVDPNEYDAEDVRKIIEIALLCTQASPATRPTMSEVVVLLKSRSLLEHLRPTMPVFVETNIKTKEGNSSSTAGSSSNATASISVLSAR | 641 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00496 | 641 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 442 | 454 | IPR008271 | GO:0004672|GO:0006468 | |
Cca01g00496 | 641 | ProSiteProfiles | Protein kinase domain profile. | 321 | 599 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca01g00496 | 641 | ProSiteProfiles | Gnk2-homologous domain profile. | 29 | 132 | IPR002902 | - | |
Cca01g00496 | 641 | ProSiteProfiles | Gnk2-homologous domain profile. | 136 | 242 | IPR002902 | - | |
Cca01g00496 | 641 | Pfam | Salt stress response/antifungal | 36 | 129 | IPR002902 | - | |
Cca01g00496 | 641 | Pfam | Salt stress response/antifungal | 159 | 239 | IPR002902 | - | |
Cca01g00496 | 641 | Gene3D | Phosphorylase Kinase; domain 1 | 295 | 397 | - | - | |
Cca01g00496 | 641 | Gene3D | - | 28 | 132 | IPR038408 | - | |
Cca01g00496 | 641 | Gene3D | - | 140 | 242 | IPR038408 | - | |
Cca01g00496 | 641 | Pfam | Protein kinase domain | 322 | 590 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca01g00496 | 641 | CDD | STKc_IRAK | 327 | 594 | - | - | |
Cca01g00496 | 641 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 16 | 638 | - | - | |
Cca01g00496 | 641 | MobiDBLite | consensus disorder prediction | 617 | 641 | - | - | |
Cca01g00496 | 641 | Gene3D | Transferase(Phosphotransferase) domain 1 | 398 | 604 | - | - | |
Cca01g00496 | 641 | ProSitePatterns | Protein kinases ATP-binding region signature. | 327 | 350 | IPR017441 | GO:0005524 | |
Cca01g00496 | 641 | PANTHER | CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN | 16 | 638 | - | - | |
Cca01g00496 | 641 | SUPERFAMILY | Protein kinase-like (PK-like) | 304 | 593 | IPR011009 | - | |
Cca01g00496 | 641 | SMART | serkin_6 | 321 | 599 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00496 | Cca-Chr1 | 6164994 | 6170820 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g00496 | 9 | 641 | Receptor kinase-like Gene Family | AT1G70520 | 36.025 | 9.41e-132 | 400 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Cca01g00496 | Pkinase | 2.1e-51 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00496 | - | - | gmx:100801131 | 998.808 |