Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00496 ATGTTTCAACTTAATCTTGTGGCCTTGATGACTTTGATGTGGTGGAGCAGTAGTATAGTTGAAGATGCAGTTGCAGACCCACAGACGAATCTGATAAACCCAGGGTGCAGCACATACAACGCTTCCAACGTGCGAAGCTTCTATGCGAATATCAATGGAACGTTTGCAGAGTTGAGAGGAGAGGTGAAGAATGAGAGCACGCACTTTGCGACGGCACAGGAAGCGAGAGGAGATGTTGTGACGTATGCGATGCTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTGCTTGCTTTGACACAGCTTCCACCCAAATCCGCAACTGCTCCTCCGCCAACGGTGCAAGAGTCATCTATGATGGCTGCTTCCTCAGGTATGAGAGCGAGAGGTTCTACGATCAGACGAATGAACTTGGCAGTGGCGTATCATGTGGAAACATAAGTTCAAATGTCACTGGTTTAAAATCAGTTGGACAACAAGTGCTGACCAATCTCCAAACTGCAACACCAAAAATCAAAGGGTTTTATGCAGCTACTAAGACACAGGTGGTTGTTGGTGGTGCTGCAATCTATGCCATTGCACAGTGTGTTGAAACTACCACTGAGGCTAAATGTCTCAGTTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCTTATGATGCTGGTTGTTTCATGAGATACTCTACCACACGCTTCTTTGCTGATAATCAAACCATTGATATCACACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTTGTAGGAGGTGTTGTTCTCATCCTTGCCTTGTTTGCTTGGCGATGGTTTACAAAACCAAAGAGGGTTCCCAGAGGTAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAAAGATTTGAAAGCTGCAACAAAAAATTTCAAGGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTATTCTAAAAAATGGAAAAGTTGTTGCCGTCAAGAAACTAGTATTGGGAAAATCAAGTAAGATGGAAGATGATTTTGAAGGCGAAGTGAAGCTTATAAGTAATGTTCATCATCGTAATCTTGTTAGACTTCTGGGTTGTTGCAGCAAAGGCCAAGAGAGAATCTTAGTTTATGAATACATGGCAAATAGTAGCCTTGACAAATTTTTATTTGGTGACAAAAAAGGTTCTCTCAATTGGAAACAACGATATGATATAATTTtaggcacagcaaggggactagcatatctacatgaggaattccatgtgtccatcatacatagagatataaagacttctaatatccttctggacgatgatcttcaaccaaaaattgctgattttgggttagcaaggcttttgccagaggatCGTTCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATGCAATGCATGGTCAATTATCTGAGAAGGCTGATACCTATAGTTATGGTATTGTAGTCTTAGAAATTATAAGTGGGCAAAAGAGTACAGATGTGAAAGGTGATGAGGAAAGTCGTGAATACCTTCTTCAACGAACATGGAAGTTGTACGAGAAAGGCATGCACTTGGAGCTAGTAGACAAGGACGTAGACCCTAATGAGTATGATGCAGAAGATGTGAGAAAAATAATAGAAATTGCTTTGTTGTGCACTCAAGCATCACCTGCAACAAGGCCAACAATGTCTGAAGTAGTAGTCCTACTCAAAAGCAGAAGTTTATTAGAGCATTTGCGACCAACTATGCCTGTTTTTGTTGAAACGAATATAAAGACAAAGGAAGGCAATTCTAGCTCAACTGCTGGTTCTTCATCTAATGCTACTGCTTCCATTTCTGTTCTATCAGCCAGATGA 1926 0.3806 MFQLNLVALMTLMWWSSSIVEDAVADPQTNLINPGCSTYNASNVRSFYANINGTFAELRGEVKNESTHFATAQEARGDVVTYAMLQCRNYLSKNDCLACFDTASTQIRNCSSANGARVIYDGCFLRYESERFYDQTNELGSGVSCGNISSNVTGLKSVGQQVLTNLQTATPKIKGFYAATKTQVVVGGAAIYAIAQCVETTTEAKCLSCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTRFFADNQTIDITPYLKQGGSSKKWAIIGGVVGGVVLILALFAWRWFTKPKRVPRGNILGATELKGPVNYKYKDLKAATKNFKAENKLGEGGFGDVYKGILKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKGDEESREYLLQRTWKLYEKGMHLELVDKDVDPNEYDAEDVRKIIEIALLCTQASPATRPTMSEVVVLLKSRSLLEHLRPTMPVFVETNIKTKEGNSSSTAGSSSNATASISVLSAR 641
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00496 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Cca01g00496 641 ProSiteProfiles Protein kinase domain profile. 321 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00496 641 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Cca01g00496 641 ProSiteProfiles Gnk2-homologous domain profile. 136 242 IPR002902 -
Cca01g00496 641 Pfam Salt stress response/antifungal 36 129 IPR002902 -
Cca01g00496 641 Pfam Salt stress response/antifungal 159 239 IPR002902 -
Cca01g00496 641 Gene3D Phosphorylase Kinase; domain 1 295 397 - -
Cca01g00496 641 Gene3D - 28 132 IPR038408 -
Cca01g00496 641 Gene3D - 140 242 IPR038408 -
Cca01g00496 641 Pfam Protein kinase domain 322 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00496 641 CDD STKc_IRAK 327 594 - -
Cca01g00496 641 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 638 - -
Cca01g00496 641 MobiDBLite consensus disorder prediction 617 641 - -
Cca01g00496 641 Gene3D Transferase(Phosphotransferase) domain 1 398 604 - -
Cca01g00496 641 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
Cca01g00496 641 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 16 638 - -
Cca01g00496 641 SUPERFAMILY Protein kinase-like (PK-like) 304 593 IPR011009 -
Cca01g00496 641 SMART serkin_6 321 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca01g00496 Cca-Chr1 6164994 6170820 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00496 9 641 Receptor kinase-like Gene Family AT1G70520 36.025 9.41e-132 400
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g00496 Pkinase 2.1e-51 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00496 - - gmx:100801131 998.808