LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g00496	ATGTTTCAACTTAATCTTGTGGCCTTGATGACTTTGATGTGGTGGAGCAGTAGTATAGTTGAAGATGCAGTTGCAGACCCACAGACGAATCTGATAAACCCAGGGTGCAGCACATACAACGCTTCCAACGTGCGAAGCTTCTATGCGAATATCAATGGAACGTTTGCAGAGTTGAGAGGAGAGGTGAAGAATGAGAGCACGCACTTTGCGACGGCACAGGAAGCGAGAGGAGATGTTGTGACGTATGCGATGCTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTGCTTGCTTTGACACAGCTTCCACCCAAATCCGCAACTGCTCCTCCGCCAACGGTGCAAGAGTCATCTATGATGGCTGCTTCCTCAGGTATGAGAGCGAGAGGTTCTACGATCAGACGAATGAACTTGGCAGTGGCGTATCATGTGGAAACATAAGTTCAAATGTCACTGGTTTAAAATCAGTTGGACAACAAGTGCTGACCAATCTCCAAACTGCAACACCAAAAATCAAAGGGTTTTATGCAGCTACTAAGACACAGGTGGTTGTTGGTGGTGCTGCAATCTATGCCATTGCACAGTGTGTTGAAACTACCACTGAGGCTAAATGTCTCAGTTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCTTATGATGCTGGTTGTTTCATGAGATACTCTACCACACGCTTCTTTGCTGATAATCAAACCATTGATATCACACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTTGTAGGAGGTGTTGTTCTCATCCTTGCCTTGTTTGCTTGGCGATGGTTTACAAAACCAAAGAGGGTTCCCAGAGGTAACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAAAGATTTGAAAGCTGCAACAAAAAATTTCAAGGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTATTCTAAAAAATGGAAAAGTTGTTGCCGTCAAGAAACTAGTATTGGGAAAATCAAGTAAGATGGAAGATGATTTTGAAGGCGAAGTGAAGCTTATAAGTAATGTTCATCATCGTAATCTTGTTAGACTTCTGGGTTGTTGCAGCAAAGGCCAAGAGAGAATCTTAGTTTATGAATACATGGCAAATAGTAGCCTTGACAAATTTTTATTTGGTGACAAAAAAGGTTCTCTCAATTGGAAACAACGATATGATATAATTTtaggcacagcaaggggactagcatatctacatgaggaattccatgtgtccatcatacatagagatataaagacttctaatatccttctggacgatgatcttcaaccaaaaattgctgattttgggttagcaaggcttttgccagaggatCGTTCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATGCAATGCATGGTCAATTATCTGAGAAGGCTGATACCTATAGTTATGGTATTGTAGTCTTAGAAATTATAAGTGGGCAAAAGAGTACAGATGTGAAAGGTGATGAGGAAAGTCGTGAATACCTTCTTCAACGAACATGGAAGTTGTACGAGAAAGGCATGCACTTGGAGCTAGTAGACAAGGACGTAGACCCTAATGAGTATGATGCAGAAGATGTGAGAAAAATAATAGAAATTGCTTTGTTGTGCACTCAAGCATCACCTGCAACAAGGCCAACAATGTCTGAAGTAGTAGTCCTACTCAAAAGCAGAAGTTTATTAGAGCATTTGCGACCAACTATGCCTGTTTTTGTTGAAACGAATATAAAGACAAAGGAAGGCAATTCTAGCTCAACTGCTGGTTCTTCATCTAATGCTACTGCTTCCATTTCTGTTCTATCAGCCAGATGA	1926	0.3806	MFQLNLVALMTLMWWSSSIVEDAVADPQTNLINPGCSTYNASNVRSFYANINGTFAELRGEVKNESTHFATAQEARGDVVTYAMLQCRNYLSKNDCLACFDTASTQIRNCSSANGARVIYDGCFLRYESERFYDQTNELGSGVSCGNISSNVTGLKSVGQQVLTNLQTATPKIKGFYAATKTQVVVGGAAIYAIAQCVETTTEAKCLSCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTRFFADNQTIDITPYLKQGGSSKKWAIIGGVVGGVVLILALFAWRWFTKPKRVPRGNILGATELKGPVNYKYKDLKAATKNFKAENKLGEGGFGDVYKGILKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKGDEESREYLLQRTWKLYEKGMHLELVDKDVDPNEYDAEDVRKIIEIALLCTQASPATRPTMSEVVVLLKSRSLLEHLRPTMPVFVETNIKTKEGNSSSTAGSSSNATASISVLSAR	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g00496	641	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Cca01g00496	641	ProSiteProfiles	Protein kinase domain profile.	321	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g00496	641	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Cca01g00496	641	ProSiteProfiles	Gnk2-homologous domain profile.	136	242	IPR002902	-
	Cca01g00496	641	Pfam	Salt stress response/antifungal	36	129	IPR002902	-
	Cca01g00496	641	Pfam	Salt stress response/antifungal	159	239	IPR002902	-
	Cca01g00496	641	Gene3D	Phosphorylase Kinase; domain 1	295	397	-	-
	Cca01g00496	641	Gene3D	-	28	132	IPR038408	-
	Cca01g00496	641	Gene3D	-	140	242	IPR038408	-
	Cca01g00496	641	Pfam	Protein kinase domain	322	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca01g00496	641	CDD	STKc_IRAK	327	594	-	-
	Cca01g00496	641	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	16	638	-	-
	Cca01g00496	641	MobiDBLite	consensus disorder prediction	617	641	-	-
	Cca01g00496	641	Gene3D	Transferase(Phosphotransferase) domain 1	398	604	-	-
	Cca01g00496	641	ProSitePatterns	Protein kinases ATP-binding region signature.	327	350	IPR017441	GO:0005524
	Cca01g00496	641	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	16	638	-	-
	Cca01g00496	641	SUPERFAMILY	Protein kinase-like (PK-like)	304	593	IPR011009	-
	Cca01g00496	641	SMART	serkin_6	321	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g00496	Cca-Chr1	6164994	6170820	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g00496	9	641	Receptor kinase-like Gene Family	AT1G70520	36.025	9.41e-132	400

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Cca01g00496		Pkinase	2.1e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g00496	-		-	gmx:100801131	998.808