Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00483 ATGGGGAAATCAAGCAAGATGGAGGACGATTTTGAAGGCGAAGTGAAACTTATAAGTAATGTTCATCATCGAAACCTCGTCAGACTCCTTGGTTGTTGCATCAAAGGCCGAGAAAGAATCCTAGTTTATGAATACATGGCAAATAGCAGTCTTGATAAATTCATATTTGGTAGCAGAAGAGattttgggttagcaaggcttctaccaggagaTCGTTCTCATCTTAGCACAAAATTTGCAGGAACATTAGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGatacctacagctatggccattttggcctaactcgctaa 339 0.3186 MGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCIKGRERILVYEYMANSSLDKFIFGSRRDFGLARLLPGDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGHFGLTR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00483 112 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 4 58 - -
Cca01g00483 112 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 61 106 - -
Cca01g00483 112 Pfam Protein tyrosine and serine/threonine kinase 4 55 IPR001245 GO:0004672|GO:0006468
Cca01g00483 112 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 58 - -
Cca01g00483 112 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 61 106 - -
Cca01g00483 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00483 112 Gene3D Transferase(Phosphotransferase) domain 1 44 109 - -
Cca01g00483 112 Gene3D Phosphorylase Kinase; domain 1 1 43 - -
Cca01g00483 112 SUPERFAMILY Protein kinase-like (PK-like) 4 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00483 Cca-Chr1 5991123 5991936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00483 10 106 Receptor kinase-like Gene Family AT1G70520 40.940 5.65e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g00483 PK_Tyr_Ser-Thr 1.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00483 - - ccaj:109790805 194.512