Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00477 ATGTTCCCGCTTTTCCTTTTCCCACATTTTCATATCAAAACTCTAATCCCCTATTTCCCATTTTCAGCCTCAAAAACCCTCACTCCAACTTCGCAACGTTTCTCCACGATCCGCAGGGAAACAGAAATGGGTTCTTGGGCTAAAGTATCTGTTCTGACTAATCAATTTATTCCACGGTCTACAACCAATACTGAATCTGGCATGGACTCCAAATTGGGAGCTGGTTTTTATAAAATATACAGAAATACAAACAAAAGAAAACTCGGTCTCTCTTTTGCTAGGTATAATTATAAAGTTAGGAGTACTGGTGCTATGAAATTTAGCCAAGATTTATCTTATTTTAAAACCGAACAAGAAATAGGAACTTGGGAAGAACCAGATACTGGCAGTGACAGTGAGTGTGATGATGAAGAATTTGAGGAAGTTGAAGATGAGAACATTGGATTTGAAAGTGATTTAGAGGAGGAAGGGATGAAGACTTCAGTTGTTACTAATGTTAATATAACTTCAGGGGACAACTATGAAGAACTTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCTGAAGAAAGAGCAATATTGCGACAGAATATTACTCCTAACTTGGAAAAAATATCAACTGCAAAATGGAGCCCATTGCACACTCTTGTGCTATCAATGCAGATGAGTTGTGTGGATAAGCTTCTTCAAAATGGTATTGATATTGATTTACCTGATAAGGAATCTCTTACTGCACTTCACAAGGCAATTATAGCTAAAAAAGAAGCTGTGATTAGCCATCTTTTACGGAGAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGACTGTGAAATTATTGATCAAGTACAAGGCCGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACCTTGCCATTCAAAGTAGAAATAGAGATATAGCAAAAATTTTGTTGGTCAATGGTGCTGATAAGACAAGGAAAAATAAGGATGGAAAAACAGCCCTGGATCTAAGCCTATGTTATGGAAAAGATTTCAAGTCTTATGACCTTGCTAAATTACTGAAGACATTTTCACTTGACAGTTATATATGA 1122 0.3734 MFPLFLFPHFHIKTLIPYFPFSASKTLTPTSQRFSTIRRETEMGSWAKVSVLTNQFIPRSTTNTESGMDSKLGAGFYKIYRNTNKRKLGLSFARYNYKVRSTGAMKFSQDLSYFKTEQEIGTWEEPDTGSDSECDDEEFEEVEDENIGFESDLEEEGMKTSVVTNVNITSGDNYEELIKKEVEQLLEPEERAILRQNITPNLEKISTAKWSPLHTLVLSMQMSCVDKLLQNGIDIDLPDKESLTALHKAIIAKKEAVISHLLRRGASPHVKDKDGATPLHYAVQVGAKMTVKLLIKYKADVNVEDNEGWTPLHLAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYDLAKLLKTFSLDSYI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00477 373 ProSiteProfiles Ankyrin repeat profile. 274 306 IPR002110 GO:0005515
Cca01g00477 373 SMART ANK_2a 340 373 IPR002110 GO:0005515
Cca01g00477 373 SMART ANK_2a 307 336 IPR002110 GO:0005515
Cca01g00477 373 SMART ANK_2a 241 270 IPR002110 GO:0005515
Cca01g00477 373 SMART ANK_2a 274 303 IPR002110 GO:0005515
Cca01g00477 373 SMART ANK_2a 208 237 IPR002110 GO:0005515
Cca01g00477 373 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Cca01g00477 373 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 138 365 - -
Cca01g00477 373 Gene3D - 175 278 IPR036770 -
Cca01g00477 373 ProSiteProfiles Ankyrin repeat region circular profile. 241 273 - -
Cca01g00477 373 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 138 365 - -
Cca01g00477 373 SUPERFAMILY Ankyrin repeat 200 352 IPR036770 -
Cca01g00477 373 Pfam Ankyrin repeats (many copies) 210 254 IPR002110 GO:0005515
Cca01g00477 373 ProSiteProfiles Ankyrin repeat profile. 241 273 IPR002110 GO:0005515
Cca01g00477 373 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Cca01g00477 373 ProSiteProfiles Ankyrin repeat region circular profile. 307 333 - -
Cca01g00477 373 Gene3D - 279 366 IPR036770 -
Cca01g00477 373 Pfam Ankyrin repeats (3 copies) 274 338 IPR002110 GO:0005515
Cca01g00477 373 ProSiteProfiles Ankyrin repeat region circular profile. 274 306 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00477 227 348 Ion Channels AT2G25600 29.412 3.20e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00477 - - gsj:114380843 552.362