Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00476 ATGGCGATTCAAGATGAAAATGGATTTAACATATCACAAAGTGGTTCTCCATTAGGAAATGGAGTATCTTTGAGTTCTGGAGTGCATTCTGTTACACATATTCAACTTCATGATCAGTTTTCTTGCGGGAATGACTATGCTCTGAAGGTGAGGAAACCATATACCATCACCAAACAGAGAGAGCGATGGACCGATGAAGAGCATAAGAAGTTCCTTGAAGCTCTAAAGCTGCATGGCCGGGCCTGGCGACGTATTGAAGAACATGTCGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAACACTACAAAAACAGTGGAATCAATTGAAATTCCGCCTCCAAGACCGAAGCGAAAGCCGATGCATCCTTACCCTCGGAAGCTAGTTGAGGCTCCTAATAAGGAAATTTTGATCCCAGGAGAACTTATGAAGTCTAGTTCTCTAAAGTCATCAGATTTTGATCAAGAAAACCAGTCTCCAAAATCAGTATTATCTGCACTTGGTTCAGACAGCCTTGGCTCCTCTGATTCAGACACACCAAATGGAAGTTTGTCTCCCATGTCATCCATTAGCGGCGTCCATACAAGCAGTTTTACCCAGGCTGAACCCAAAACAACGTCCGAGGAAGCTGGCCTAAACACTGACTCATCTCATGATCAGAAACCTCTCATGAAATTCAAGCTTCCTCCAAATGAAAGTATGTCCATCGAAGAAGACACATCGGAAGAATCTTCCAGACGGACTTTCAAACTTTTTGGAATGACTCTAACGGTAACGGATACCTGCAAACCTTCTTCTCTAACAATTGAGGCATGCAAACCAATACCTCCAAACATAAACAAGGGGGATGGAAAATTGGAACTTGTTGGCCACAGCACACCATGTGAAACATCAGCCATATCTCAGCTAAAGGTGAGAGTGAAACCTGAAAGATGTGGGAAAGGGTTTGTGCCATATAAGAGGTGCATGGCAGGGAGAGAAAACAGGTCTTCATCTGTGACAGATGATGATAGAGAAGAGCAATGCATGGACCTTTCGTTGTAG 1086 0.4365 MAIQDENGFNISQSGSPLGNGVSLSSGVHSVTHIQLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNTTKTVESIEIPPPRPKRKPMHPYPRKLVEAPNKEILIPGELMKSSSLKSSDFDQENQSPKSVLSALGSDSLGSSDSDTPNGSLSPMSSISGVHTSSFTQAEPKTTSEEAGLNTDSSHDQKPLMKFKLPPNESMSIEEDTSEESSRRTFKLFGMTLTVTDTCKPSSLTIEACKPIPPNINKGDGKLELVGHSTPCETSAISQLKVRVKPERCGKGFVPYKRCMAGRENRSSSVTDDDREEQCMDLSL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00476 361 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Cca01g00476 361 MobiDBLite consensus disorder prediction 344 361 - -
Cca01g00476 361 MobiDBLite consensus disorder prediction 341 361 - -
Cca01g00476 361 PANTHER SWI/SNF COMPLEX-RELATED 27 287 - -
Cca01g00476 361 SMART sant 59 107 IPR001005 -
Cca01g00476 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Cca01g00476 361 MobiDBLite consensus disorder prediction 158 233 - -
Cca01g00476 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Cca01g00476 361 MobiDBLite consensus disorder prediction 125 143 - -
Cca01g00476 361 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Cca01g00476 361 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Cca01g00476 361 PANTHER PROTEIN REVEILLE 7-RELATED 27 287 - -
Cca01g00476 361 CDD SANT 62 105 IPR001005 -
Cca01g00476 361 MobiDBLite consensus disorder prediction 112 258 - -
Cca01g00476 361 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Cca01g00476 361 Gene3D - 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00476 Cca-Chr1 5929457 5932885 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g00476 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00476 - - gmx:780539 555.829