Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00476 | ATGGCGATTCAAGATGAAAATGGATTTAACATATCACAAAGTGGTTCTCCATTAGGAAATGGAGTATCTTTGAGTTCTGGAGTGCATTCTGTTACACATATTCAACTTCATGATCAGTTTTCTTGCGGGAATGACTATGCTCTGAAGGTGAGGAAACCATATACCATCACCAAACAGAGAGAGCGATGGACCGATGAAGAGCATAAGAAGTTCCTTGAAGCTCTAAAGCTGCATGGCCGGGCCTGGCGACGTATTGAAGAACATGTCGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAACACTACAAAAACAGTGGAATCAATTGAAATTCCGCCTCCAAGACCGAAGCGAAAGCCGATGCATCCTTACCCTCGGAAGCTAGTTGAGGCTCCTAATAAGGAAATTTTGATCCCAGGAGAACTTATGAAGTCTAGTTCTCTAAAGTCATCAGATTTTGATCAAGAAAACCAGTCTCCAAAATCAGTATTATCTGCACTTGGTTCAGACAGCCTTGGCTCCTCTGATTCAGACACACCAAATGGAAGTTTGTCTCCCATGTCATCCATTAGCGGCGTCCATACAAGCAGTTTTACCCAGGCTGAACCCAAAACAACGTCCGAGGAAGCTGGCCTAAACACTGACTCATCTCATGATCAGAAACCTCTCATGAAATTCAAGCTTCCTCCAAATGAAAGTATGTCCATCGAAGAAGACACATCGGAAGAATCTTCCAGACGGACTTTCAAACTTTTTGGAATGACTCTAACGGTAACGGATACCTGCAAACCTTCTTCTCTAACAATTGAGGCATGCAAACCAATACCTCCAAACATAAACAAGGGGGATGGAAAATTGGAACTTGTTGGCCACAGCACACCATGTGAAACATCAGCCATATCTCAGCTAAAGGTGAGAGTGAAACCTGAAAGATGTGGGAAAGGGTTTGTGCCATATAAGAGGTGCATGGCAGGGAGAGAAAACAGGTCTTCATCTGTGACAGATGATGATAGAGAAGAGCAATGCATGGACCTTTCGTTGTAG | 1086 | 0.4365 | MAIQDENGFNISQSGSPLGNGVSLSSGVHSVTHIQLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNTTKTVESIEIPPPRPKRKPMHPYPRKLVEAPNKEILIPGELMKSSSLKSSDFDQENQSPKSVLSALGSDSLGSSDSDTPNGSLSPMSSISGVHTSSFTQAEPKTTSEEAGLNTDSSHDQKPLMKFKLPPNESMSIEEDTSEESSRRTFKLFGMTLTVTDTCKPSSLTIEACKPIPPNINKGDGKLELVGHSTPCETSAISQLKVRVKPERCGKGFVPYKRCMAGRENRSSSVTDDDREEQCMDLSL | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00476 | 361 | Pfam | Myb-like DNA-binding domain | 60 | 103 | IPR001005 | - | |
Cca01g00476 | 361 | MobiDBLite | consensus disorder prediction | 344 | 361 | - | - | |
Cca01g00476 | 361 | MobiDBLite | consensus disorder prediction | 341 | 361 | - | - | |
Cca01g00476 | 361 | PANTHER | SWI/SNF COMPLEX-RELATED | 27 | 287 | - | - | |
Cca01g00476 | 361 | SMART | sant | 59 | 107 | IPR001005 | - | |
Cca01g00476 | 361 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 58 | 107 | IPR006447 | GO:0003677 | |
Cca01g00476 | 361 | MobiDBLite | consensus disorder prediction | 158 | 233 | - | - | |
Cca01g00476 | 361 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 55 | 109 | IPR017930 | - | |
Cca01g00476 | 361 | MobiDBLite | consensus disorder prediction | 125 | 143 | - | - | |
Cca01g00476 | 361 | SUPERFAMILY | Homeodomain-like | 54 | 107 | IPR009057 | - | |
Cca01g00476 | 361 | ProSiteProfiles | Myb-like domain profile. | 55 | 105 | IPR001005 | - | |
Cca01g00476 | 361 | PANTHER | PROTEIN REVEILLE 7-RELATED | 27 | 287 | - | - | |
Cca01g00476 | 361 | CDD | SANT | 62 | 105 | IPR001005 | - | |
Cca01g00476 | 361 | MobiDBLite | consensus disorder prediction | 112 | 258 | - | - | |
Cca01g00476 | 361 | ProSiteProfiles | SANT domain profile. | 58 | 109 | IPR017884 | - | |
Cca01g00476 | 361 | Gene3D | - | 62 | 108 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00476 | Cca-Chr1 | 5929457 | 5932885 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Cca01g00476 | Myb_DNA-binding | 5.9e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00476 | - | - | gmx:780539 | 555.829 |