Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00475 ATGTCAATGTCTCAACAAACACCAACCATTCTTCTCTATCTCTTCACACTCCTCACTTCAGCCGACACTTCCAATTACTCTTTCTCCGACTCCGACCCTCCTCCGCCCGCCCAGTGGCTCTACGCGCAGGCCACCCACACCGCCGCCGCCGACGCGGTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCACCGCCGCCCTCAGCCAGGCCCTGTTCGAGCGCGGCCAGATCTGCGGCGGCTGCTTCGAGCTGCGGTGCCGGGAGGAGGAGTCGGACTTCGACCGGCGGTGGTGCGTCCCCGGCACGTCGGTGACCGTGACGGCCACCAATTTCTGCGCCCCCAACTACGGTTCCGACGCGGAGAGTCTTGGCGGACACTGTAACCCTCCGAAGCAGCACTTCGTGGTGGCCGTTGAGACATTCGAGAAAATCGCAATCTGGAAGGCCGGCACCGGCAACATGCCGGTGGAGTATCGCAGGATAAAGTGTAGAAGGGAAGGGGGGATCCGGTTTACAATTAATGGTTCTGGAATCTTCATTTCGCTGCTGATTAGCAATGTGGGTGGCATGGGAGACATTGTTGGTGTGAAGGTGAAGGGTTCAAGAACTGGTTGGCTTCCCATGGGTAGGAATTGGGGTCAGAACTGGCATGTCAATGCCTTACTACAGAACCAACCTCTTTCCTTTGAGGTTACTGCTAGTGATGGCATAACTCTTACATCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAATCTTTTCAAGGCTTAGAGATGGGCTTATTCACTACAAGCTTCGTGCCGAGCTTAGAGTTGGGCTTAGTTGGATTTCAGTCAGGTTACAAGGAATATCTTGAAGACCAAATTAGACAACTACCAAGAAAAAGGTGA 1257 0.3747 MSMSQQTPTILLYLFTLLTSADTSNYSFSDSDPPPPAQWLYAQATHTAAADAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAALSQALFERGQICGGCFELRCREEESDFDRRWCVPGTSVTVTATNFCAPNYGSDAESLGGHCNPPKQHFVVAVETFEKIAIWKAGTGNMPVEYRRIKCRREGGIRFTINGSGIFISLLISNVGGMGDIVGVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTASDGITLTSYNVAPKDWTFGQSFQGLEMGLFTTSFVPSLELGLVGFQSGYKEYLEDQIRQLPRKR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00475 418 SMART dpbb_1 185 279 IPR007112 -
Cca01g00475 418 PANTHER EXPANSIN-A15 185 378 IPR002963 GO:0009664
Cca01g00475 418 Pfam Expansin C-terminal domain 290 367 IPR007117 -
Cca01g00475 418 Gene3D - 177 285 IPR036908 -
Cca01g00475 418 PRINTS Expansin signature 364 380 IPR002963 GO:0009664
Cca01g00475 418 PRINTS Expansin signature 300 321 IPR002963 GO:0009664
Cca01g00475 418 PRINTS Expansin signature 245 262 IPR002963 GO:0009664
Cca01g00475 418 PRINTS Expansin signature 335 356 IPR002963 GO:0009664
Cca01g00475 418 PRINTS Expansin signature 288 300 IPR002963 GO:0009664
Cca01g00475 418 PRINTS Expansin signature 180 194 IPR002963 GO:0009664
Cca01g00475 418 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 299 378 IPR007117 -
Cca01g00475 418 PANTHER EXPANSIN-A13 185 378 - -
Cca01g00475 418 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 185 289 IPR007112 -
Cca01g00475 418 Pfam Lytic transglycolase 185 279 IPR009009 -
Cca01g00475 418 SUPERFAMILY Barwin-like endoglucanases 184 307 IPR036908 -
Cca01g00475 418 SUPERFAMILY PHL pollen allergen 286 377 IPR036749 -
Cca01g00475 418 Coils Coil 53 53 - -
Cca01g00475 418 Gene3D - 289 380 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00475 Cca-Chr1 5924719 5928458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00475 185 381 Expansin Gene Family AT3G03220 68.528 7.89e-99 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00475 - - ccaj:109790729 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00475 01 5924719 5928458 Cca05g01406 05 32462053 32466633 PCT