Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00464 ATGCCCTTGGAGGGGATTTTCATTGAACCCACTTCAACTTCTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCAAGCACTTCCTCTTCCTCTTCTCTGATTTGCAGCACATCTGGTGGAACCGCCATTAATTATGAGCCACACAATTCAACAAGCGCAAATTTCTCTTCTCAAGCTCACACTGAGCTTTCTCTTGGAAGGAATTTCAGTggtggaggaagaggaggaggaggTCTTGaagaaccaccaccaccgccaccaccacacaacaacaacaacaacCCTTATTATCAAACCCAACAGGCCCATTTCCATCATCTTCATCACCATTCTAACACTAGTATTGCTTCAAAAGCAGCAGCAGCAACAACAACAAACACTTCTACAAGCTCCTCCACTCATTTGAATCACATAAACTATGGGGTTTCTTTGCTTGATGTGTCATCGGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATACAAGAGACAAGGATCATCAAGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCtctttgtcctcctcttgttctcctctttcttcttcttctccttcttcttctcctGCACCCTACTTCGCTGCGGCCGCTGCAGCAGGAGGTCTGGATCCCATGTCCTATTTGAACTCAGCAGGATCTGTCGCCGCGGCCGCAGCGTATAGGGCCGCCGCAGCCACAAGGTTTAATGGAATTTCCGGTGAGCCTTTCAAatctcatcatccattgcaccatcatcattcatcatcaCACTATGGGGTTGGACTTGGACCCTCTCACGAAGCCTCTTCAGGGTTGATGAGATCAAGGTTTCTGCCTAAGTTGCCAACCAAGAGAAGCATGAGAGCACCAAGAATGCGGTGGACAAGCACACTACACGCTCGATTTGTTCATGCCGTGGAGCTTCTCGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACGGTTAAGACCACTGATAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCCGGAGAAGATGACATGTCTCCAATAGGAAGCAGTGGTGGTGTGCGTCAATTTTCAGACCAAAGAGGCCTTTCGGATCGACCAGTGCAACAAGATATGGATTACTCTTCGGCCAACACTCTATGGAGTAACTCCTCAAGGTAA 1269 0.4137 MPLEGIFIEPTSTSSTPDLSLHISPPSTSSSSSLICSTSGGTAINYEPHNSTSANFSSQAHTELSLGRNFSGGGRGGGGLEEPPPPPPPHNNNNNPYYQTQQAHFHHLHHHSNTSIASKAAAATTTNTSTSSSTHLNHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHTRDKDHQAKMCLYHHMPTYPSLSSSCSPLSSSSPSSSPAPYFAAAAAAGGLDPMSYLNSAGSVAAAAAYRAAAATRFNGISGEPFKSHHPLHHHHSSSHYGVGLGPSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPIGSSGGVRQFSDQRGLSDRPVQQDMDYSSANTLWSNSSR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00464 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 306 359 IPR006447 GO:0003677
Cca01g00464 422 Gene3D - 305 362 - -
Cca01g00464 422 MobiDBLite consensus disorder prediction 53 135 - -
Cca01g00464 422 MobiDBLite consensus disorder prediction 1 36 - -
Cca01g00464 422 MobiDBLite consensus disorder prediction 387 422 - -
Cca01g00464 422 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 421 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cca01g00464 422 SUPERFAMILY Homeodomain-like 303 359 IPR009057 -
Cca01g00464 422 MobiDBLite consensus disorder prediction 114 135 - -
Cca01g00464 422 MobiDBLite consensus disorder prediction 8 36 - -
Cca01g00464 422 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 421 - -
Cca01g00464 422 MobiDBLite consensus disorder prediction 361 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00464 Cca-Chr1 5816621 5822814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00464 154 422 G2-like Transcription Factor Family AT5G16560 51.439 4.84e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca01g00464 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00464 - - ccaj:109796302 637.876