Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00459 ATGTCGCCACTTCCAACTCCTTCCAACCTTTGCTTCTCATTCATCATACTGTTCTTCAACGTCTCTTTGATTTTCGCCACGCAATTTGACTTCGGAACTTTGACTATGAGCACGCTCAAGCTTCTCGGCGCCGCCCACCTCCACAACAACACCATCAGCCTCACCGGCGACCCCGCCGTCCCCAACTCCGTCGCCGGCAGAGCGCTTTACGCCACCCCCGTCAGATTCCGGCAACCGGGCACCCCTTCTCTGGCGAGCTTCTCCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCCTCCGTCGGCGGCGGCCTCGCCTTCGTCATCTCGCCGGATGCCTCCGCCGTCGGGGGGGCCGGAGGCTTCCTAGGCCTCGGTGGCAGCGGCGCCTGCGTCGCCGTGGAATTCGACACCCTCATGGACGTGGAATTCGTCGACATTAACGGAAACCACGTCGGATTGGACCTAAACAGCGTCGTTTCGACGCAAGTTAGCGACTTGGGAGAACTCGGGGTGGATCTCAAAAGCGGGGACACGGTGAACGCGTGGATCGATTACGACGGAAACACCAAAGTGTTGCGCGTGTGGGTGTCGTACTCGAATGTGAAGCCCGAAGTTCCGATTTTGAAGGCGGATCTCGATGTGGGTCTGTATTTTAAGGATTTCATGTATGTGGGGTTTTCTGGGTCTACACAAGGTAGCACCGAGGTGCACAGTGTCGAGTGGTGGAGTTTCAACTCCTCCTTTGATCCGGCGGCGGCGGCGGCTCCTGCCTCCACGTCAGCACCCTCCGCCACGTCAGCGCCAGAGGAGAAGGAGAGTAAGTCTTCTAACAAGGGTAATGTGGGGGCGGTTGCTGGGGTTGTCAGTGCTGGTGCCTTTGTTCTTGCTCTCTTTGCTGGTGCATTGATTTGGGTGTATTCTAAGAAGGTGAAGCCTGTGAAGAGGCTTGGTGGTTCTATTGAGTCCGAGATCATTAGAATGCCTAAGGAGTTTAGCTACAAGGAATTGAAGCTGGCCACTAGGGGGTTCAGTGCTAATAGGGCCATTGGCCATGGTGCTTTTGGGACTGTTTACAAGGGTGTGTTGCCTGAGAGTGGTGACATTGTTGCTGTGAAGAGGTGCAACCATAGTGGTCAGGGGAAGAGTGAGTTTCTGTCTGAGTTGTCTATAATTGGGAGTCTTCGGCATCGGAATTTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCAAATGGGAGTTTAGACAAGGCTTTGTATGAGGCCAGGATGAGTTTGTCATGGCCTCACAGGCTCAAAATTTTGTTAGGTGTGTCGTCTGTTTTGGCCTACTTGCATCATGAGTGTGAAAACCAGGTAATTCATAGGGACATTAAGACTAGCAACATTATGTTGGATGAAGGGTTCAATGCCCGGTTAGGCGATTTTGGTTTGGCAAGACAAACGGAGCATGACAAGTCTCCTGATGCCACCGTGGCTGCCGGGACAATGGGGTACCTCGCCCCGGAGTATGTGCTTACTGGTAGGGCCACTGAGAAAACTGATGTGTTTAGTTATGGTGCTGTGGTTCTTGAGGTGGCCAGTGGGAGGAGGCCTATTGAGAAAGACTTTGTTGGGGCTGGTAAAGCTAAGAGGAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTACATCAAGAAGGTAAGTTACTAATGGCGGCGGATCCAAAGCTTGAAGGCGAGTTTGAGGAAGGGGAGATGAGGAGAGTGCTCTTGGTTGGATTAGCTTGTTCACATCCTGATTCAGTGGCAAGGCCTACTATGAGGGGAGTGGTTCAGATGCTGTTGGGTGAGGCTGAAGTGCCTATCGTCCCTAGAGCCAAGCCATCTACTAGTTACAGTACTTCTCACCTCTTAATGAGCTTGCAAGATAGTGAATCAGACTGTAACATTGCTACGATCACCATCTCCACCTCTTCATCAGGGAACAGCTTCAATGACAGAGATATAGTCTGA 2028 0.5217 MSPLPTPSNLCFSFIILFFNVSLIFATQFDFGTLTMSTLKLLGAAHLHNNTISLTGDPAVPNSVAGRALYATPVRFRQPGTPSLASFSTFFSFSVTNLNPSSVGGGLAFVISPDASAVGGAGGFLGLGGSGACVAVEFDTLMDVEFVDINGNHVGLDLNSVVSTQVSDLGELGVDLKSGDTVNAWIDYDGNTKVLRVWVSYSNVKPEVPILKADLDVGLYFKDFMYVGFSGSTQGSTEVHSVEWWSFNSSFDPAAAAAPASTSAPSATSAPEEKESKSSNKGNVGAVAGVVSAGAFVLALFAGALIWVYSKKVKPVKRLGGSIESEIIRMPKEFSYKELKLATRGFSANRAIGHGAFGTVYKGVLPESGDIVAVKRCNHSGQGKSEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYEARMSLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDFVGAGKAKRSSNLVEWVWSLHQEGKLLMAADPKLEGEFEEGEMRRVLLVGLACSHPDSVARPTMRGVVQMLLGEAEVPIVPRAKPSTSYSTSHLLMSLQDSESDCNIATITISTSSSGNSFNDRDIV 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00459 675 Pfam Legume lectin domain 27 257 IPR001220 GO:0030246
Cca01g00459 675 MobiDBLite consensus disorder prediction 259 281 - -
Cca01g00459 675 ProSiteProfiles Protein kinase domain profile. 346 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00459 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 253 IPR013320 -
Cca01g00459 675 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 25 670 - -
Cca01g00459 675 Pfam Protein kinase domain 348 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00459 675 SMART serkin_6 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00459 675 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
Cca01g00459 675 PANTHER - 25 670 - -
Cca01g00459 675 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Cca01g00459 675 CDD STKc_IRAK 352 619 - -
Cca01g00459 675 SUPERFAMILY Protein kinase-like (PK-like) 328 653 IPR011009 -
Cca01g00459 675 Gene3D - 25 266 - -
Cca01g00459 675 CDD lectin_legume_LecRK_Arcelin_ConA 27 251 IPR001220 GO:0030246
Cca01g00459 675 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Cca01g00459 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00459 Cca-Chr1 5699077 5701790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00459 13 659 Receptor kinase-like Gene Family AT3G53380 64.672 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca01g00459 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00459 - - gmx:100815895 1061.21