Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00454 ATGATAGCTCATCTTTTTAATGCGCCATTAGAAGAGTCTGAGGCTGCAGTTGGTGTTGGTACAGTCTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAAGTTAAGCTGCGTGATGGGTACTATGTGATGGACCCTGAAAAGGCCGTGGAGTTGGTGGATGAGAACATTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAATTTGAAGATGTCAAAacatga 243 0.4239 MIAHLFNAPLEESEAAVGVGTVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVELVDENIICVAAILGSTLNGEFEDVKT 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00454 80 Gene3D - 16 80 IPR015421 GO:0003824
Cca01g00454 80 SUPERFAMILY PLP-dependent transferases 1 79 IPR015424 -
Cca01g00454 80 PANTHER GLUTAMATE DECARBOXYLASE 22 79 - -
Cca01g00454 80 PANTHER GLUTAMATE DECARBOXYLASE 1 22 - -
Cca01g00454 80 PANTHER GLUTAMATE DECARBOXYLASE 1 22 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca01g00454 80 Pfam Pyridoxal-dependent decarboxylase conserved domain 22 79 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca01g00454 80 PANTHER GLUTAMATE DECARBOXYLASE 22 79 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00454 Cca-Chr1 5663915 5664572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00454 1 79 Calmodulin-binding Proteins AT5G17330 58.333 3.70e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00454 K01580 - gmx:100787167 137.117