Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00453 ATGCGGCCGCCATGTGACATGGATCTGCGATGCAGGTTTAAGATGCCGGAGGAGTCCATACCGAAGGAGGCAGCGTACCAGATCATAAACGACGAGTTGATGTTGGACGGGAATCCGAGGCTGAACCTGGCGTCGTTTGTGACAACTTGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATTAATAAGAACTATGTTGACATGGACGAGTACCCTGTCACTACCGAGCTACAGAATCGGTGTGTAAATATGATAGCTCATCTTTTCAATGCACCATTAGGAGAGTCTCAGGCTGCAGTTGGTGTTGGCACAGTTGGTTCATCTGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAGAACAGAAGGAAAGAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCCAGGTACTTTGAGGTGGAGTTAAAGGAAGTTAATTTGCGTGATGGATACTATGTGATGGACCCTGAAAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCTACGCTAAATGGAGAGTTTGAAGATGTCAAACGCTTGAATGATCTCCTGGTTGAAAAGAATAAGCAAACTGGATGGAAGACTCCTATTCATGTGGATGCAGCTAGTGGTGGGTTCATTGCACCATTTATTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCACTGGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTCTGGTCTATGCTGGAATCGGTTGGGTTATTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTTATCTTCCATATCAACTATCTCGGTGCTGATCAACCCACCTTTACCCTTAACTTCTCTAAAGGGTCTAGCCAAGTCATTGCTCAATACTACCAACTAGTTCGCCTTGGCTATGAGGGATATAGAAACGTGATGGAAAATTGTAGAGACAACATGATAGTGCTGAAAGAGGGACTCGAGAAAACAGGGCGGTTTGACATTGTGTCGAAAGAGAATGGTGTGCCTTTGGTGGCTTTCACATTGAAAGACCACACCCACTTTGATGAGTTCCAAATCTCTGATCTGCTGAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTCACCGTGCTACGTGTTGTCATCAGGGAGGACTTCTCAAGAACCCTCGCAGAGCGTCTTGTGGCTGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCAGCAAGGGTGATAAGTAGCACCTCTGTCACAGTCAATACAGAACAAAATGGCAAGGTGGTGGTTGCCAAGAAGAGTGCTCTAGAGACACAGAGGGAAATCACTGCGATTTGGAAGAAGTTAGTGTTGGAGAGGAAGAAGCTGAATGACAAGATGATGGTGTGT 1455 0.4653 MRPPCDMDLRCRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESQAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKQTGWKTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLVRLGYEGYRNVMENCRDNMIVLKEGLEKTGRFDIVSKENGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTSVTVNTEQNGKVVVAKKSALETQREITAIWKKLVLERKKLNDKMMVC 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00453 485 Gene3D - 49 343 IPR015421 GO:0003824
Cca01g00453 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 16 364 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca01g00453 485 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 12 427 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca01g00453 485 PANTHER GLUTAMATE DECARBOXYLASE 11 482 - -
Cca01g00453 485 Gene3D - 8 48 - -
Cca01g00453 485 Gene3D - 344 431 - -
Cca01g00453 485 SUPERFAMILY PLP-dependent transferases 12 427 IPR015424 -
Cca01g00453 485 CDD DOPA_deC_like 42 422 - -
Cca01g00453 485 PANTHER GLUTAMATE DECARBOXYLASE 11 482 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00453 Cca-Chr1 5598529 5660074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00453 12 485 Calmodulin-binding Proteins AT2G02010 84.388 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00453 K01580 - gmx:100796533 910.598