Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00451 ATGACAAGAAAGAAGGTGAAGTTGGCATTCATAGCCAACGACTCAGCTAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTGAGTGAACTTAGCACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATAGTCCCTATGACCCTCAACCCGAGGTTTGGCCATCCCCAATGGGAGTTCAAAGGGTGCTTTCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGGATCCTAAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGACAATAGGGAAAAGGAGATGACTCAGCTCATGTTTCAGTACCTTAGTGCAGGTAAAATCATGCACAACATAAGCATGGTTGACTTGAATGATCTTGCATGGTTGATTGACCAGAACTTGAAGGACATCAACAGAAGGATTGAAGTGTTGACCAAGAATAATGGTCAAAGTCAAACACAAGTTGCACCACCAGTGGTGACTGATGTTGTTGCCAAGATTGAAGACAAGGCACAAGGGAGTAGTATTCATCATGGACAAGGGTTTGATATCAACATGGATCTCATGCACAAGCAAAACTGGTTTATGAATTTGATGAATAGTGGTGGAGGTGGTGGGAACGAGGCAATGCCTTTTGGTGATGTTAATAATCACCAAAATGGCTTTTGGCCTAATCCCTTTTTCCATTGA 726 0.4298 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLSKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNNGQSQTQVAPPVVTDVVAKIEDKAQGSSIHHGQGFDINMDLMHKQNWFMNLMNSGGGGGNEAMPFGDVNNHQNGFWPNPFFH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00451 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g00451 241 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cca01g00451 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca01g00451 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g00451 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 206 - -
Cca01g00451 241 Coils Coil 91 114 - -
Cca01g00451 241 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Cca01g00451 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 206 - -
Cca01g00451 241 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca01g00451 241 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cca01g00451 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00451 Cca-Chr1 5572726 5573491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00451 1 161 Type I MADS-box Gene Family AT5G48670 68.323 6.25e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g00451 SRF-TF 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00451 - - gmx:100813231 423.705