Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00448 ATGGACCCTGAAAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCTACGCTAAATGGAGAGTTTGAAGATGTCAAACGCTTGAATGATCTCCTGGTTGAAAAGAATAAGCAAACTGGATGGAAGACTCCTATTCATGTGGATGCAGCTAGTGGTGGGTTCATTGCACCATTTATTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCGCTGGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTCTGGTCTATGCTGGAATCGGTTGGGTTATTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTTATCTTCCATATCAACTATCTCGGTGCTGATCAACCCACCTTTACCCTTAACTTCTCTAAAGGGTCTAGCCAAGTCATTGCTCAATACTACCAACTAGTTCGCCTTGGCTATGAGGGATATAGAAACGTGATGGAAAATTGTAGAGACAACATGATAGTGCTGAAAGAGGGACTCGAGAAAACAGGGCGGTTTGACATTGTGTCGAAAGAGAATGGTGTGCCTTTGGTGGCTTTCACATTGAAAGACCACACCCACTTTGATGAGTTCCAAATCTCTGATCTGCTGAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTCACCGTGCTACGTGTTGTCATCAGGGAGGACTTCTCAAGAACCCTCGCAGAGCGTCTTGTGGCTGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCAGCAAGGGTGATAAGTAGCACCTCTGTCACAGTCAATACAGAACAAAATGGCAAGGTGGTGGTTGCCAAGAAGAGTGCTCTAGAGACACAGAGGGAAATCACTGCGATTTGGAAGAAGTTAGTGTTGGAGAGGAAGAAGCTGAATGACAAGATGATGGTGTGTGTTAGACTTAGCTTTGATTGA 960 0.4604 MDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKQTGWKTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLVRLGYEGYRNVMENCRDNMIVLKEGLEKTGRFDIVSKENGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTSVTVNTEQNGKVVVAKKSALETQREITAIWKKLVLERKKLNDKMMVCVRLSFD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00448 319 Gene3D - 172 259 - -
Cca01g00448 319 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 192 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca01g00448 319 Gene3D - 1 171 IPR015421 GO:0003824
Cca01g00448 319 SUPERFAMILY PLP-dependent transferases 1 255 IPR015424 -
Cca01g00448 319 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 255 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca01g00448 319 PANTHER GLUTAMATE DECARBOXYLASE 1 310 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca01g00448 319 PANTHER GLUTAMATE DECARBOXYLASE 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00448 Cca-Chr1 5550413 5551701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00448 1 313 Calmodulin-binding Proteins AT2G02010 81.150 0.0 523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00448 01 5550413 5551701 Cca05g01411 05 32543297 32549600 PCT