Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00446 ATGATAGCTCATCTTTTCAATGCACCATTAGGAGAGTCTGAGGCTGCAGTTGGTGTTGGCACAGTTGGTTCATCTGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAGAACAGAAGGAAAGAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCCAGGTACTTTGAGGTGGAGTTAAAGGAAGTTAATTTGCGTGATGGATACTATGTGATGGACCCTGAAAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCTACGCTAAATGGAGAGTTTGAAGATGTCAAACGCTTGAATGATCTCCTGGTTGAAAAGAATAAGCAAACTGGATGGAAGACTCCTATTCATGTGGATGCAGCTAGTGGTGGGTTCATTGCACCATTTATTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCGCTGGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTCTGGTCTATGCTGGAATCGGTTGGGTTATTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTTATCTTCCATATCAACTATCTCGGTGCTGATCAACCCACCTTTACCCTTAACTTCTCTAAAGGGTCTAGCCAAGTCATTGCTCAATACTACCAACTAGTTCGCCTTGGCTATGAGGGATATAGAAACGTGATGGAAAATTGTAGAGACAACATGATAGTGCTGAAAGAGGGACTCGAGAAAACAGGGCGGTTTGACATTGTGTCGAAAGAGAATGGTGTGCCTTTGGTGGCTTTCACATTGAAAGACCACACCCACTTTGATGAGTTCCAAATCTCTGATCTGCTGAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTCACCGTGCTACGTGTTGTCATCAGGGAGGACTTCTCAAGAACCCTCGCAGAGCGTCTTGTGGCTGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCAGCAAGGGTGATAAGTAGCACCTCTGTCACAGTCAATACAGAACAAAATGGCAAGGTGGTGGTTGCCAAGAAGAGTGCTCTAGAGACACAGAGGGAAATCACTGCGATTTGGAAGAAGTTAGTGTTGGAGAGGAAGAAGCTGAATGACAAGATGATGTCTCCTTTGACCGAGTCTTTGTGCATGACAAACTATAGTTGGCAGGTGCTTGTGACTCCAGAAGAAGCCAAGATTTGGTTTGTGATTACCGGTCCTGAAATGGATGCTGAAAAAGTGGTGCATACTGGAGGTTGCCATTGTAAGAGTGTAAGGTGGAAAGCGGTTGCTCCTTCTAGTGTTGTGGCATGGGACTGCAACTGCTCAAACTGCTCCATGAGAGCCAATAACCACTTCATTGTGCCTGCTGACAATTTCGAGCTTTTGGGAGATTCTGGGAAGTTTCTTAGTACGTACACTTTTGGCTCTCATACTGCAAAGCACACATTCTGTAAAATCTGTGGTATAACCTCGTTCTATTATCCACGCTCAAACCCAGATGGGGTTGCAGTTGCATTTAGGTGTGTTGACCCTGGAACGTTGACACACGTTGAAATCAGGAATTTTGATGGGAAGAATTGGGAAAGTTCTTATAATCAGACTGGCATCTCTTCATATTCGAAGGTGCAAAAGTAA 1707 0.454 MIAHLFNAPLGESEAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKQTGWKTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLVRLGYEGYRNVMENCRDNMIVLKEGLEKTGRFDIVSKENGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTSVTVNTEQNGKVVVAKKSALETQREITAIWKKLVLERKKLNDKMMSPLTESLCMTNYSWQVLVTPEEAKIWFVITGPEMDAEKVVHTGGCHCKSVRWKAVAPSSVVAWDCNCSNCSMRANNHFIVPADNFELLGDSGKFLSTYTFGSHTAKHTFCKICGITSFYYPRSNPDGVAVAFRCVDPGTLTHVEIRNFDGKNWESSYNQTGISSYSKVQK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00446 568 ProSiteProfiles CENP-V/GFA domain profile. 439 552 IPR006913 GO:0016846
Cca01g00446 568 PANTHER GLUTAMATE DECARBOXYLASE 1 397 - -
Cca01g00446 568 PANTHER GLUTAMATE DECARBOXYLASE 1 397 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca01g00446 568 SUPERFAMILY Mss4-like 431 546 IPR011057 -
Cca01g00446 568 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 279 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca01g00446 568 Gene3D - 1 258 IPR015421 GO:0003824
Cca01g00446 568 Gene3D - 440 555 - -
Cca01g00446 568 Pfam Glutathione-dependent formaldehyde-activating enzyme 463 535 IPR006913 GO:0016846
Cca01g00446 568 SUPERFAMILY PLP-dependent transferases 1 342 IPR015424 -
Cca01g00446 568 Gene3D - 259 346 - -
Cca01g00446 568 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 342 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00446 Cca-Chr1 5530875 5534508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00446 1 394 Calmodulin-binding Proteins AT2G02010 83.503 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00446 K01580 - gmx:100796533 761.525