Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00438 ATGGCAAAGAAAGCAGCAGCAGTAATCTCAATCTCCTTAACCGCGTTCTTTGTTATTTCCGTGTTGTCCTCCTCCGTGGATTTTTTCCTCTACGGCGGATGCACGCAGCAGCGCTACGCCCCCACCTCGCCCTACGAGTCCAACCTCAACTCGCTCCTCACCTCGCTGGTCAACTCGGCCACGTACGCCTCCTACAACAACTTCACCGTGGTGGGCTCCAGCCCCGCCGACGTGGCCTACGGCCTCTACCAGTGCCGCGGCGACCTCGCCATGCCGGAGTGCGCCGCCTGCGTCGCGCGCGCCGTCCAGCGCGCCGGGGAGCTCTGCCCGGCGGCGTGCGGCGGCGCGGTGCAGCTGGAGGGGTGCTACGTGAAGTACGACAACAACACGTTTCTCGGGTTGGAGGACAAGACGGTGGTGCTGAAGAAGTGTGGGCCTGGGTCCGTTGGGCCCGGTTCGGGCGAGAGGGACGCGGTGCTGGGCGGGTTGTCGGGTTCGGGCGGGTACTTTCGGGTTGGTGGGTCGGGTGAGGTGAGGGGCGTGGCGCAGTGTTGCGGGGATTTGAGTTTTGGCGAGTGTCAGGATTGCGTGGGGGAGGCCATCCGACGGTTGAGGAGCGACTGTGCGGTCGCCGATTATGGGGATGTGTTCCTCGCCAAGTGTTACGCCAGGTTCTCTACCAACGGGGCCCATGCTTACAACAAGGCCCATCCAGGAAAATCGGACAACGGAGGTGAAAAGACTTTTGCAATAATTGTTGGACTATTAGCGGGAGTAGCTATACTCATTATTTTCCTTGCTTTCTTGAGAAGGATTTGTGAGGGACAAGGTAAATAA 837 0.601 MAKKAAAVISISLTAFFVISVLSSSVDFFLYGGCTQQRYAPTSPYESNLNSLLTSLVNSATYASYNNFTVVGSSPADVAYGLYQCRGDLAMPECAACVARAVQRAGELCPAACGGAVQLEGCYVKYDNNTFLGLEDKTVVLKKCGPGSVGPGSGERDAVLGGLSGSGGYFRVGGSGEVRGVAQCCGDLSFGECQDCVGEAIRRLRSDCAVADYGDVFLAKCYARFSTNGAHAYNKAHPGKSDNGGEKTFAIIVGLLAGVAILIIFLAFLRRICEGQGK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00438 278 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 8 274 - -
Cca01g00438 278 Gene3D - 160 229 IPR038408 -
Cca01g00438 278 Gene3D - 26 131 IPR038408 -
Cca01g00438 278 ProSiteProfiles Gnk2-homologous domain profile. 27 131 IPR002902 -
Cca01g00438 278 ProSiteProfiles Gnk2-homologous domain profile. 132 230 IPR002902 -
Cca01g00438 278 PANTHER PLASMODESMATA-LOCATED PROTEIN 5 8 274 - -
Cca01g00438 278 Pfam Salt stress response/antifungal 175 227 IPR002902 -
Cca01g00438 278 Pfam Salt stress response/antifungal 34 128 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00438 Cca-Chr1 5393558 5395716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00438 7 225 Pollen Coat Proteome AT4G20670 25.000 5.12e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00438 - - gmx:100811615 397.897