Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00437 ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGTCCATGGACTGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGCCAATGTTGCTGGAGGGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGTGGCAAAAGTTGCAGGCTGAGATGGACAAACTACCTGAGGCCAGACCTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAACAGATGGTCCAAGATTGCTTCTCATCTCCCGGGAAGAACTGATAATGAGATCAAGAACCATTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGACCCTGTTACACACAAGTCACTTTCCAACACAACTGAACAAACTCAACCAGATGAACAACCCCATCAACCAATGCAAGAACAACATCAGCAACAATCTTTCCCACTTGAGAAAGACCCGAAATTTGAATCTCAAAATGATCAAAACAAGGAGCAAGAGAAGCCAGAGACTTCAATTGAATCATCAACCATCACTGAAGCTAAGGAGGAAGAGCAAATCATGACACCTCTATTTGACTCAATGGAACTAATGAATGAGTTCTGCACTGATGAAGTTCCCATAATAGAACCAAATGAGATTCTAGTACCCTCTGCTCCCTCCACTTCACCAACCACTACTACAACATCATCTTCAACAACGTCATCTTCTTATTCAAATTCATCCAACTTCCTTGAAGACCTGCTGCTACCAGATTTTGATGattacaatgataataatattgacaataacaatagcaGCATGACCTTGTGGGATGATGACTTTATTAGAAGTTTGAATTGGCTTATTAatgatgatgatgatggtgaCAGAAACCAAGTGTTTGACGCTCCTCTAAATCAGTACCCAAAAGTGATCATGGATTCAGAATCTTGGGCCTATGGGTTGTTTTGA 975 0.399 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSNTTEQTQPDEQPHQPMQEQHQQQSFPLEKDPKFESQNDQNKEQEKPETSIESSTITEAKEEEQIMTPLFDSMELMNEFCTDEVPIIEPNEILVPSAPSTSPTTTTTSSSTTSSSYSNSSNFLEDLLLPDFDDYNDNNIDNNNSSMTLWDDDFIRSLNWLINDDDDGDRNQVFDAPLNQYPKVIMDSESWAYGLF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00437 324 SMART sant 66 114 IPR001005 -
Cca01g00437 324 SMART sant 13 63 IPR001005 -
Cca01g00437 324 Gene3D - 71 116 - -
Cca01g00437 324 MobiDBLite consensus disorder prediction 223 245 - -
Cca01g00437 324 CDD SANT 16 61 IPR001005 -
Cca01g00437 324 Gene3D - 11 67 - -
Cca01g00437 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca01g00437 324 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Cca01g00437 324 MobiDBLite consensus disorder prediction 129 191 - -
Cca01g00437 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca01g00437 324 MobiDBLite consensus disorder prediction 222 245 - -
Cca01g00437 324 MobiDBLite consensus disorder prediction 155 191 - -
Cca01g00437 324 PANTHER MYB TRANSCRIPTION FACTOR 1 298 - -
Cca01g00437 324 MobiDBLite consensus disorder prediction 129 154 - -
Cca01g00437 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca01g00437 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca01g00437 324 CDD SANT 74 112 IPR001005 -
Cca01g00437 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca01g00437 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca01g00437 324 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00437 Cca-Chr1 5360948 5363630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00437 1 324 MYB Transcription Factor Family AT5G16600 46.089 7.20e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g00437 Myb_DNA-binding 9.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00437 K09422 - gmx:100803624 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01434 05 32995090 32997589 Cca01g00437 01 5360948 5363630 PCT