Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00434 ATGGCTTCTTCCTTGGATATGTCGCTTGATGATAGAATTAAGAACAGGAGTAACAGAGGGAGAGGTAGAGGACGTGGCAGAGCCCAGACTGGCCGTGGACCAAGTGGTGCTCTTGGTGGTGGAAGAATGGCTGGTGCGGTTAATAGTAGAAGAATGGCTGGTGCTGGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCATATGCTATTGCCAAGTCTATTCGCCGAGCTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTAGGCACCAAGTTGTATGTTTCCAATTTGGACCGTGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTCATGCTGTTCATTATGACAAAAATGGACATCCAAGCGGTTCTGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATCCGGAATTGCCTATATCTGCTCGTGTGAATGTCACTGGGGTGAATGGGCGGAGGAAGAGAACTGTTGTAATGACGCCAAGAGGTGGTCAAGCTGGAGGTCCTGCTATGCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAgtgggaggggtgctggtggaggtcgaggtcgtggtcgtggtaggggtGCTGTTGGAGGCGGAGGCCGTGGCCGCGGAAGAAAGGACAATGTTGAGAAGTCTGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATGCCGAGGCCATGAACATCTCTTGA 888 0.4561 MASSLDMSLDDRIKNRSNRGRGRGRGRAQTGRGPSGALGGGRMAGAVNSRRMAGAGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDRGVTNEDIRELFSELGELKRHAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNPELPISARVNVTGVNGRRKRTVVMTPRGGQAGGPAMPNRGAGWGRRGGTRSGRGAGGGRGRGRGRGAVGGGGRGRGRKDNVEKSAEELDKELETYHAEAMNIS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00434 295 Coils Coil 270 290 - -
Cca01g00434 295 Gene3D - 108 274 IPR012677 -
Cca01g00434 295 MobiDBLite consensus disorder prediction 216 295 - -
Cca01g00434 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Cca01g00434 295 PANTHER THO COMPLEX SUBUNIT 4C 1 294 - -
Cca01g00434 295 SMART rrm1_1 115 187 IPR000504 GO:0003723
Cca01g00434 295 CDD RRM_THOC4 114 188 - -
Cca01g00434 295 SMART FoP_duplication_2 218 295 IPR025715 -
Cca01g00434 295 MobiDBLite consensus disorder prediction 267 288 - -
Cca01g00434 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Cca01g00434 295 SUPERFAMILY RNA-binding domain, RBD 108 188 IPR035979 GO:0003676
Cca01g00434 295 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 294 - -
Cca01g00434 295 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00434 Cca-Chr1 5310283 5316541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00434 113 188 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.67e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00434 K12881 - gmx:100801491 429.869