Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00432 ATGAAGAGGGATCACGAAGACAGGGGTGGGGTGAGTTCGTCAATGTCGAACTCGAGCGGGAAGGCGAAGATGTGGGAGGAGGAGCAGCAACAGGGGGGGAATGACGAGTTGCTGGCGGCGTTGGGGTACAAGGTGCGTTCCTCGGACATGGCTGACGTGGCGCAGAAGCTGGAGCAGTTGGAGATGGTGATGGGGAGTGCTCAGGAAGAGGGAATTTCTCACCTGGCTTCCGACACCGTTCACTACGACCCCACCGATCTCTATTCCTGGGTCCAAACCATGCTCACCGAACTCAACCCTCCCCCTAACAACCTCGACCACCTCTTAATCCAAGACCCCATCCTCACCCCCTCACGCGTTTTCAATGACGACTCCGAGTACGACCTCAGAGCCATTCCCGGCATCGCCGCATACCCTCCTcaaaacaccaacaacaacatcgaagaaatcgaggccaacaaccacaacaataacaacaacaaGCGACTGAAACCTTCTCCAATTGAATCCACAGATTCAGTCTCGGAGCCGACGCGGCCGGTGGTGCTGGTTGACTCGCAGGAAACCGGCGTGCGTCTTGTCCACACACTGATGGCATGCGCGGAGGCCGTTCAGCAGAAGAATCTGAAGCTGGCGGAGGCGCTGGTGAAGCACGTGGGGATACTGGCGGCGTCTCAAGCCGGAGCCATGAGGAAAGTGGCTTTCTACTTCGCTCAGGCCCTAGCCCATCGAATCTACGGCGCCTTCCCGGAGGAGCCTCTCGACTCTTCCTTCTCGGATCTTCTCCACATGCACTTCTACGAGTCCTGCCCCTATCTCAAATTCGCGCACTTCACCGCCAACCAGGCCATTCTGGAAGCCTTCGCCACCGCAGGGAGAGTCCACGTCATCGACTTCGGCCTTAAGCAAGGGATGCAGTGGCCCGCCCTCATGCAGGCACTCGCATTGCGGCCCGGCGGCCCCCCCACCTTCCGCTTGACAGGAATCGGCCCGCCCCAGCCCGATAACACCGACGCGCTGCAGCAGGTGGGCTTGAAGCTGGCCCAGCTCGCCGAGACAATCGGCGTGCGATTCGAGTTCCGCGGATTCGTTTGCAACAGCCTCGCCGATCTCGACCCGAACATGCTCGAGATCCGACCCGGGGAAGCCGTCGCAGTCAATTCCGTCTTTGAACTCCACCGCATGCTGGCCCGACCCGGATCCGTGGAGAAAGTCCTGGACACTGTTAAGAAAATCAAGCCCAAAATCATCACCGTAGTGGAACAAGAAGCCAACCACAACGGGCCGGTTTTTCTCGACCGGTTCACGGAGGCTTTACATTATTACTCGAGTTTATTCGACTCGCTGGAGGGTTCCTCCTCCTCGACCGGGTTGGGCTCACCGAGTCAGGACCACTTAATGTCGGAGGTCTACCTCGGGAGACAGATATGCAACGTGGTGGCTTACGAGGGCGTGGACCGGGTGGAGCGCCACGAGACTCTTACCCAGTGGAGAGGGAGATTGGGCTCGGGCGGGTTCGACCCGGTCCATCTCGGTTCCAACGCGTTCAAGCAAGCGAGTACGCTGCTGGCTCTATTCGCGGGCGGTGATGGGTACAGGGTGGAGGAAAATAACGGCTGCCTCTTGCTAGGGTGGCATACTAGGCCACTCATCGCCACCTCCGCGTGGAAGCTTCCCTCGAGCGAGTCCTAG 1692 0.5739 MKRDHEDRGGVSSSMSNSSGKAKMWEEEQQQGGNDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEEGISHLASDTVHYDPTDLYSWVQTMLTELNPPPNNLDHLLIQDPILTPSRVFNDDSEYDLRAIPGIAAYPPQNTNNNIEEIEANNHNNNNNKRLKPSPIESTDSVSEPTRPVVLVDSQETGVRLVHTLMACAEAVQQKNLKLAEALVKHVGILAASQAGAMRKVAFYFAQALAHRIYGAFPEEPLDSSFSDLLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGLKLAQLAETIGVRFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVEKVLDTVKKIKPKIITVVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSSSTGLGSPSQDHLMSEVYLGRQICNVVAYEGVDRVERHETLTQWRGRLGSGGFDPVHLGSNAFKQASTLLALFAGGDGYRVEENNGCLLLGWHTRPLIATSAWKLPSSES 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00432 563 ProSiteProfiles GRAS family profile. 184 557 IPR005202 -
Cca01g00432 563 PANTHER DELLA PROTEIN GAI1-RELATED 12 558 IPR030006 GO:0003712|GO:0005634
Cca01g00432 563 MobiDBLite consensus disorder prediction 11 25 - -
Cca01g00432 563 Pfam GRAS domain family 193 557 IPR005202 -
Cca01g00432 563 SMART DELLA_2 35 108 - -
Cca01g00432 563 MobiDBLite consensus disorder prediction 152 177 - -
Cca01g00432 563 Pfam Transcriptional regulator DELLA protein N terminal 35 102 IPR021914 -
Cca01g00432 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 558 IPR005202 -
Cca01g00432 563 Gene3D - 33 98 IPR038088 -
Cca01g00432 563 Coils Coil 50 70 - -
Cca01g00432 563 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00432 Cca-Chr1 5261615 5264130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00432 1 561 GRAS Transcription Factor Family AT2G01570 62.479 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca01g00432 GRAS 3.3e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00432 K14494 - gmx:100799695 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00432 01 5261615 5264130 Cca05g01457 05 33324141 33327590 PCT