Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00429 ATGGAGAACTTGCTGGGTCTGCTCAGAATTCATGTTCAAAGAGGTGTCAATCTTGCTATCAGAGATGTGGTTAGCAGCGACCCTTATGTTGTCATCAAAATGGGGAAGCAGAAGCTGAAGACCCGGGTAGTCAAGAAGAATCTAAATCCTGAATGGAATGATGATTTGACTTTGTCTATTTCGGACCCTCATGCTCCAATCCATCTACATGTGTATGACAAGGACACATTTAGCTTGGATGACAAGATGGGGGATGCTGAGTTTGCCATAGGTCCATTTATTGAAGCAGTAAAGATGAGGTTGCATGGTCTCCCCAATAATACTATAGTTACAAAAGTGCTACCTTGTCGACAAAATTGCTTAGCAGAAGAGAGTCACATAGTGTGGAAGGATGGAAAAGTTGTTCAAAACATGGTTCTTAGACTAAGAAATGTCGAGTCTGGGGAAGTGGAGCTGCAGTTGCATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 498 0.4277 MENLLGLLRIHVQRGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVKKNLNPEWNDDLTLSISDPHAPIHLHVYDKDTFSLDDKMGDAEFAIGPFIEAVKMRLHGLPNNTIVTKVLPCRQNCLAEESHIVWKDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSRHL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00429 165 CDD C2_ArfGAP 5 148 - -
Cca01g00429 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Cca01g00429 165 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Cca01g00429 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
Cca01g00429 165 Gene3D C2 domain 4 161 IPR035892 -
Cca01g00429 165 Pfam C2 domain 6 92 IPR000008 -
Cca01g00429 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE 1 164 - -
Cca01g00429 165 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00429 Cca-Chr1 5214004 5216609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00429 38 165 C2H2 Transcription Factor Family AT1G70790 57.692 3.63e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00429 - - gmx:100793531 318.161